Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG736_RS15235 Genome accession   NZ_CP130718
Coordinates   3380248..3381981 (+) Length   577 a.a.
NCBI ID   WP_327182922.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01334     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3375248..3386981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG736_RS15200 (OG736_15185) - 3375752..3376270 (+) 519 WP_142264183.1 hypothetical protein -
  OG736_RS15205 (OG736_15190) - 3376475..3376810 (+) 336 WP_142264184.1 YnfA family protein -
  OG736_RS15225 (OG736_15210) - 3378088..3378393 (+) 306 WP_057600990.1 hypothetical protein -
  OG736_RS15230 (OG736_15215) - 3378563..3380020 (+) 1458 WP_028806369.1 FGGY family carbohydrate kinase -
  OG736_RS15235 (OG736_15220) rcrP 3380248..3381981 (+) 1734 WP_327182922.1 ABC transporter ATP-binding protein Regulator
  OG736_RS15240 (OG736_15225) rcrQ 3381981..3383909 (+) 1929 WP_327182923.1 ABC transporter ATP-binding protein Regulator
  OG736_RS15245 (OG736_15230) - 3384003..3385283 (-) 1281 WP_327182924.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62496.59 Da        Isoelectric Point: 5.2484

>NTDB_id=787168 OG736_RS15235 WP_327182922.1 3380248..3381981(+) (rcrP) [Streptomyces sp. NBC_01334]
MLIRLLRTYLRPYKKPIALLVALQFLQTCATLYLPTLNAHIIDNGVVEGDTGYILSFGGVMIGISLAQVVCNIGAVYYGA
RTASALGRDLRGAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQIQMLALMTFTLMVSAPIMCVGGVVLALGLDVPLSAV
LVAVVPVLGICVTLIVRRLRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDEYEQQRFREANSDLTDISLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGEMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLKSIELVARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVAVA
EVDPVLLAKTVGFVPQRPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIIVLDEGLVVGTGTHRELMAAN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=787168 OG736_RS15235 WP_327182922.1 3380248..3381981(+) (rcrP) [Streptomyces sp. NBC_01334]
GTGCTCATACGACTACTACGGACCTATCTCAGGCCCTACAAGAAACCCATCGCCCTGCTCGTGGCGCTCCAGTTCCTCCA
GACCTGCGCCACTCTCTACCTGCCCACACTGAACGCGCACATCATCGACAACGGCGTCGTCGAGGGAGACACCGGATACA
TCCTGTCCTTCGGCGGCGTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGCGCCGTGTACTACGGCGCC
AGAACCGCTTCCGCGCTCGGCCGGGACCTTCGGGGGGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGCGCCCCCTCGCTGATCACCCGGACGACCAACGACGTCCAGCAGATCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGGGTGGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCGTCGCCGTGGTGCCGGTGCTGGGCATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGAAGCTGGACACCGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGCAGCGGTTCCGGGAGGCCAACAGCGACCTCACCGACATCTCGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCCCATCGGATCGACAGCGG
TGAGATGCAGATCGGTGATCTGACCGCCTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCTCGTCGTCCGTGGTGCCG
CCGGTGGCTCCCGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGATCCGGGGGGCCGGATTCCGCTATCCCGGCGCCGA
GGAGCCCGTCCTGAAGTCCATCGAGCTGGTGGCGCGGCCGGGTGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTGCCCCGGCTGTTCGACGCCACCGAGGGCGAGGTGCTCGTCGACGGCGTGGCCGTCGCC
GAGGTCGACCCGGTGCTGCTCGCGAAGACCGTCGGATTTGTACCGCAGAGGCCGTACCTGTTCGCGGGCACGGTGGCGAC
CAACCTGCGCTACGGCAATCCGGACGCGACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGGGTCTGGAGAACGGGCTCGACTCCCCCATCGCGCAGGGCGGGACGAATGTCTCCGGTGGCCAGCGGCAGCGGCTC
GCGATCGCCCGGACGCTCGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCACTGGACTACGCCACCGA
CGCGGCACTGCGGGCGGCGCTCGGGCGGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGGCCACCATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGTCTGGTCGTCGGCACGGGCACCCACCGCGAGCTGATGGCGGCCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.248

97.747

0.393