Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG736_RS14010 Genome accession   NZ_CP130718
Coordinates   3093189..3094214 (-) Length   341 a.a.
NCBI ID   WP_327182732.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01334     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3088189..3099214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG736_RS13995 (OG736_13980) - 3089779..3091104 (+) 1326 WP_327182730.1 MFS transporter -
  OG736_RS14000 (OG736_13985) - 3091474..3092145 (+) 672 WP_142263945.1 response regulator transcription factor -
  OG736_RS14005 (OG736_13990) - 3092123..3093196 (-) 1074 WP_327182731.1 dipeptide ABC transporter ATP-binding protein -
  OG736_RS14010 (OG736_13995) amiE 3093189..3094214 (-) 1026 WP_327182732.1 ABC transporter ATP-binding protein Regulator
  OG736_RS14015 (OG736_14000) - 3094234..3095154 (-) 921 WP_327182733.1 ABC transporter permease -
  OG736_RS14020 (OG736_14005) - 3095184..3096110 (-) 927 WP_327182734.1 ABC transporter permease -
  OG736_RS14025 (OG736_14010) - 3096144..3097754 (-) 1611 WP_327182735.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37444.01 Da        Isoelectric Point: 7.0606

>NTDB_id=787165 OG736_RS14010 WP_327182732.1 3093189..3094214(-) (amiE) [Streptomyces sp. NBC_01334]
MTILESPASAGEAQETAPLLEIRDLHVEFRTRDGVAKAVNGVDYRVHSGETLAVLGESGSGKSVTAQAVMGILDAPPGRI
TQGQILFRGRDLLTMTGEERRRLRGRRIAMIFQDALSALNPVLSVGHQLGEMFRVHQGLSKKDARARAVELMDRVRIPAA
ATRVGDYPHQFSGGMRQRIMIAMAVALEPDLVIADEPTTALDVTVQAQVMDLLAELRQESDMGLILITHDLGLVADVADR
IAVMYGGRIVESAPVHDIYRRPAHPYTEALLESIPRLDRKGDRLRSIDGLPPSLLRMPAGCAFHPRCHRASDRCRTEVPA
PARVDAERTSACHFWKETFGE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=787165 OG736_RS14010 WP_327182732.1 3093189..3094214(-) (amiE) [Streptomyces sp. NBC_01334]
ATGACCATCCTGGAGAGCCCGGCCTCGGCCGGGGAGGCGCAGGAGACGGCGCCCCTGCTGGAAATCCGCGATCTGCACGT
CGAGTTCCGCACCCGCGACGGCGTGGCCAAGGCGGTCAACGGCGTCGACTACCGCGTGCACAGCGGCGAGACGCTGGCGG
TGCTCGGCGAGTCGGGCTCCGGCAAGTCGGTCACCGCGCAGGCCGTGATGGGCATTCTCGATGCGCCGCCCGGCCGTATC
ACCCAGGGCCAGATCCTCTTCCGCGGCCGGGACCTGCTGACCATGACGGGTGAGGAGCGCCGCAGGCTCCGCGGCCGGAG
GATCGCCATGATCTTCCAGGACGCGCTCTCCGCGCTCAACCCGGTGCTCAGCGTGGGCCACCAGCTCGGTGAGATGTTCC
GGGTGCACCAGGGACTGTCGAAGAAGGACGCCCGGGCCAGGGCGGTCGAGCTGATGGACCGGGTGCGGATCCCGGCGGCC
GCCACGCGGGTCGGGGACTACCCGCACCAGTTCTCCGGCGGAATGCGCCAGCGGATCATGATCGCGATGGCCGTGGCCCT
CGAACCGGATCTCGTCATCGCCGACGAGCCGACGACGGCCCTGGACGTCACCGTGCAAGCCCAGGTGATGGATCTGCTCG
CCGAGTTGCGTCAGGAGTCCGACATGGGGCTGATCCTGATCACGCACGACCTGGGGCTGGTCGCGGATGTCGCGGACCGG
ATCGCGGTGATGTACGGCGGCCGGATCGTGGAGAGCGCGCCCGTCCACGACATCTACCGGCGGCCCGCCCACCCGTACAC
CGAGGCCCTGCTGGAGTCGATTCCCCGGCTGGACCGCAAGGGCGACCGGCTCCGATCGATCGACGGTCTGCCGCCCAGCC
TGCTGCGGATGCCCGCCGGGTGCGCCTTCCACCCGCGCTGCCACCGGGCGAGCGACCGGTGCCGCACCGAGGTGCCGGCC
CCGGCCCGGGTGGACGCGGAGCGGACGAGCGCCTGCCACTTCTGGAAGGAGACCTTCGGTGAGTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(250-314)

ABC transporter (ABC_tran)

(40-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

49.32

86.217

0.425
  oppD Streptococcus mutans UA159

45.86

92.082

0.422
  amiE Streptococcus thermophilus LMG 18311

48.464

85.924

0.416
  amiE Streptococcus thermophilus LMD-9

48.464

85.924

0.416