Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PSR14_RS10740 Genome accession   NZ_CP117702
Coordinates   2036547..2036834 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus sp. A01H     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2031547..2041834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR14_RS10720 (PSR14_10740) - 2032721..2032918 (+) 198 WP_001048096.1 DUF4083 domain-containing protein -
  PSR14_RS10725 (PSR14_10745) - 2032950..2033411 (+) 462 WP_000035006.1 NUDIX hydrolase -
  PSR14_RS10730 (PSR14_10750) nadE 2033460..2034278 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  PSR14_RS10735 (PSR14_10755) - 2034550..2036430 (+) 1881 WP_001026023.1 ABC transporter permease -
  PSR14_RS10740 (PSR14_10760) abrB 2036547..2036834 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  PSR14_RS10745 (PSR14_10765) - 2037109..2038059 (+) 951 WP_001089047.1 serine protease -
  PSR14_RS10750 (PSR14_10770) - 2038100..2038408 (-) 309 WP_001259894.1 helix-turn-helix transcriptional regulator -
  PSR14_RS10755 (PSR14_10775) - 2038516..2039451 (+) 936 WP_000877956.1 aldo/keto reductase -
  PSR14_RS10760 (PSR14_10780) - 2039501..2040676 (+) 1176 WP_000832291.1 MFS transporter -
  PSR14_RS10765 (PSR14_10785) - 2040863..2041087 (-) 225 WP_000162601.1 hypothetical protein -
  PSR14_RS10770 (PSR14_10790) - 2041172..2041519 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=787132 PSR14_RS10740 WP_000648330.1 2036547..2036834(+) (abrB) [Bacillus sp. A01H]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=787132 PSR14_RS10740 WP_000648330.1 2036547..2036834(+) (abrB) [Bacillus sp. A01H]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516