Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PSR14_RS07505 Genome accession   NZ_CP117702
Coordinates   1411069..1411392 (-) Length   107 a.a.
NCBI ID   WP_000578880.1    Uniprot ID   A0A2A7DD22
Organism   Bacillus sp. A01H     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1406069..1416392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR14_RS07480 (PSR14_07495) - 1406351..1407637 (+) 1287 WP_000247652.1 D-alanyl-D-alanine carboxypeptidase family protein -
  PSR14_RS07485 (PSR14_07500) sipW 1407823..1408392 (+) 570 WP_000767809.1 signal peptidase I SipW -
  PSR14_RS07490 (PSR14_07505) - 1408455..1409042 (+) 588 WP_000172834.1 CalY family protein -
  PSR14_RS07495 (PSR14_07510) - 1409203..1409976 (+) 774 WP_098487017.1 DUF4047 domain-containing protein -
  PSR14_RS07500 (PSR14_07515) calY 1410400..1410993 (+) 594 WP_000053740.1 biofilm matrix protein CalY -
  PSR14_RS07505 (PSR14_07520) sinR 1411069..1411392 (-) 324 WP_000578880.1 helix-turn-helix domain-containing protein Regulator
  PSR14_RS07510 (PSR14_07525) - 1411472..1411606 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  PSR14_RS07515 (PSR14_07530) inhA1 1411948..1414338 (+) 2391 WP_001035918.1 M6 family metalloprotease immune inhibitor InhA1 -
  PSR14_RS07520 (PSR14_07535) - 1414510..1415877 (+) 1368 WP_000116809.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12386.21 Da        Isoelectric Point: 8.5614

>NTDB_id=787129 PSR14_RS07505 WP_000578880.1 1411069..1411392(-) (sinR) [Bacillus sp. A01H]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=787129 PSR14_RS07505 WP_000578880.1 1411069..1411392(-) (sinR) [Bacillus sp. A01H]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692