Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PSR14_RS06850 Genome accession   NZ_CP117702
Coordinates   1295591..1297417 (+) Length   608 a.a.
NCBI ID   WP_000003390.1    Uniprot ID   A0A5M9H363
Organism   Bacillus sp. A01H     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290591..1302417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR14_RS06830 (PSR14_06840) - 1290901..1291575 (-) 675 WP_000362603.1 TerC family protein -
  PSR14_RS06835 (PSR14_06845) mecA 1291915..1292598 (+) 684 WP_000350710.1 adaptor protein MecA Regulator
  PSR14_RS06840 (PSR14_06850) - 1292671..1294215 (+) 1545 WP_098487493.1 cardiolipin synthase -
  PSR14_RS06845 (PSR14_06855) - 1294296..1295540 (+) 1245 WP_000612277.1 competence protein CoiA -
  PSR14_RS06850 (PSR14_06860) pepF 1295591..1297417 (+) 1827 WP_000003390.1 oligoendopeptidase F Regulator
  PSR14_RS06855 (PSR14_06865) - 1297535..1297708 (-) 174 WP_000754592.1 hypothetical protein -
  PSR14_RS06860 (PSR14_06870) - 1297938..1298831 (-) 894 WP_000360652.1 ClpXP adapter SpxH family protein -
  PSR14_RS06865 (PSR14_06875) - 1298831..1299229 (-) 399 WP_000043380.1 hypothetical protein -
  PSR14_RS06870 (PSR14_06880) - 1299410..1299988 (-) 579 WP_000191110.1 CYTH domain-containing protein -
  PSR14_RS06875 (PSR14_06885) - 1300135..1300506 (+) 372 WP_001180002.1 hypothetical protein -
  PSR14_RS06880 (PSR14_06890) - 1300554..1301714 (-) 1161 WP_061656786.1 site-specific integrase -
  PSR14_RS06885 (PSR14_06895) - 1301782..1302207 (-) 426 WP_061656787.1 ImmA/IrrE family metallo-endopeptidase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70289.54 Da        Isoelectric Point: 4.6399

>NTDB_id=787128 PSR14_RS06850 WP_000003390.1 1295591..1297417(+) (pepF) [Bacillus sp. A01H]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDAEWEQEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVQSVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=787128 PSR14_RS06850 WP_000003390.1 1295591..1297417(+) (pepF) [Bacillus sp. A01H]
ATGTCTGAACAAAACACAGCAAAAACATTACCGGATCGTAACGAAATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAACAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGTTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGATCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACATTGCAAACATTCTTGA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCGTTAGAAGAAATTACGCGTCAACGCCCTCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATTACACATGGCCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACGTACGGGAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAGCGTAATAACTTTAATGCACGCGTTCGTAAATATGACTCTGCACGTCAAGCAGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTCAATCTGTAAATGACAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGAGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTTGGTGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCCTATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGCCATTCT
GTCCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGGGATTATTCAATCTTTGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACTATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTAACACCAGACATGCTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTACCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9H363

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488