Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PSR14_RS00220 Genome accession   NZ_CP117702
Coordinates   40399..40683 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. A01H     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35399..45683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR14_RS00185 (PSR14_00185) tmk 35553..36179 (+) 627 WP_000677229.1 dTMP kinase -
  PSR14_RS00190 (PSR14_00190) holB 36215..37198 (+) 984 WP_000978582.1 DNA polymerase III subunit delta' -
  PSR14_RS00195 (PSR14_00195) - 37204..38031 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  PSR14_RS00200 (PSR14_00200) yabA 38046..38396 (+) 351 WP_000412054.1 DNA replication initiation control protein YabA -
  PSR14_RS00205 (PSR14_00205) - 38517..39257 (+) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PSR14_RS00210 (PSR14_00210) - 39244..39534 (+) 291 WP_000414340.1 GIY-YIG nuclease family protein -
  PSR14_RS00215 (PSR14_00215) rsmI 39503..40378 (+) 876 WP_000267828.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PSR14_RS00220 (PSR14_00220) abrB 40399..40683 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  PSR14_RS00225 (PSR14_00225) metG 41201..43183 (+) 1983 WP_000159679.1 methionine--tRNA ligase -
  PSR14_RS00230 (PSR14_00230) - 43350..44117 (+) 768 WP_000895831.1 TatD family hydrolase -
  PSR14_RS00235 (PSR14_00235) rnmV 44334..44891 (+) 558 WP_000692826.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=787113 PSR14_RS00220 WP_000843036.1 40399..40683(-) (abrB) [Bacillus sp. A01H]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=787113 PSR14_RS00220 WP_000843036.1 40399..40683(-) (abrB) [Bacillus sp. A01H]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCGATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851