Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHB58_RS26255 Genome accession   NZ_CP130716
Coordinates   5864997..5865971 (+) Length   324 a.a.
NCBI ID   WP_371654515.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00150     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5859997..5870971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB58_RS26235 (OHB58_26170) - 5860312..5861223 (+) 912 WP_371654511.1 GNAT family N-acetyltransferase -
  OHB58_RS26240 (OHB58_26175) - 5861334..5862962 (+) 1629 WP_371654512.1 ABC transporter substrate-binding protein -
  OHB58_RS26245 (OHB58_26180) - 5863051..5863974 (+) 924 WP_371654513.1 ABC transporter permease -
  OHB58_RS26250 (OHB58_26185) - 5863967..5864983 (+) 1017 WP_371654514.1 ABC transporter permease -
  OHB58_RS26255 (OHB58_26190) amiE 5864997..5865971 (+) 975 WP_371654515.1 ABC transporter ATP-binding protein Regulator
  OHB58_RS26260 (OHB58_26195) - 5865964..5866992 (+) 1029 WP_371654516.1 ABC transporter ATP-binding protein -
  OHB58_RS26265 (OHB58_26200) - 5867280..5868422 (-) 1143 WP_371654517.1 ABC transporter ATP-binding protein -
  OHB58_RS26270 (OHB58_26205) - 5868475..5869542 (-) 1068 WP_371654518.1 ABC transporter ATP-binding protein -
  OHB58_RS26275 (OHB58_26210) - 5869607..5870584 (-) 978 WP_371654519.1 ABC transporter permease -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35179.99 Da        Isoelectric Point: 7.1390

>NTDB_id=787108 OHB58_RS26255 WP_371654515.1 5864997..5865971(+) (amiE) [Streptomyces sp. NBC_00150]
MLLEVRDLQVEFKTRDGIAKAVNGVTYSVAAGETLAVLGESGSGKSVTAQAVMGILDMPPGRITGGEIVFQGQDLLKLKE
DARRKVRGSGMAMVFQDALSSLNPVLSVGAQLAEMFTVHKGMSRTDAKAKAVELMDRVRIPAAKERVGQYPHQFSGGMRQ
RIMIAMAMALEPALIIADEPTTALDVTVQAQVMDLLAELRREMNMGLILITHDLGVVADVADRIAVMYAGRIVEEAPVHE
IYKAPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLMHIPSGCAFHPRCPMAQDVCRTDVPPLANVSEGRRSACHFWKE
CLNG

Nucleotide


Download         Length: 975 bp        

>NTDB_id=787108 OHB58_RS26255 WP_371654515.1 5864997..5865971(+) (amiE) [Streptomyces sp. NBC_00150]
ATGCTGCTCGAAGTGCGCGACCTCCAGGTCGAGTTCAAGACCAGGGACGGCATCGCCAAGGCCGTCAACGGGGTCACCTA
CTCGGTGGCGGCCGGGGAGACGCTGGCGGTGCTCGGCGAGTCCGGCTCCGGCAAGTCGGTGACCGCACAGGCCGTGATGG
GCATCCTGGACATGCCGCCCGGCCGGATCACCGGCGGCGAGATCGTCTTCCAGGGCCAGGACCTGCTGAAGCTCAAGGAG
GACGCGCGGCGCAAGGTGCGCGGCTCCGGGATGGCGATGGTCTTCCAGGACGCGCTGTCCTCGCTCAACCCGGTGCTGAG
CGTGGGCGCGCAGCTCGCCGAGATGTTCACCGTGCACAAGGGGATGTCCCGCACCGACGCCAAGGCCAAGGCCGTGGAGC
TGATGGACCGGGTGCGGATCCCGGCCGCAAAGGAGCGGGTCGGTCAGTACCCGCACCAGTTCTCCGGCGGTATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCCCTGGAGCCCGCGCTGATCATCGCGGACGAGCCGACCACCGCGCTCGACGTGAC
CGTCCAGGCCCAGGTGATGGATCTGCTCGCGGAGCTCCGGCGCGAGATGAACATGGGGCTGATCCTGATCACCCACGACC
TCGGGGTGGTCGCGGACGTCGCGGACCGCATCGCGGTGATGTACGCGGGCCGGATCGTCGAGGAGGCCCCGGTCCACGAG
ATCTACAAGGCCCCCGCGCACCCGTACACGCGCGGCCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAAGGGCCTGCCGCCCAATCTGATGCACATCCCGTCCGGCTGCGCCTTCCATCCGCGCTGCCCGATGGCGC
AGGACGTGTGCCGCACGGACGTACCGCCGCTGGCAAACGTCTCCGAGGGCCGCAGAAGCGCGTGCCACTTCTGGAAGGAG
TGCCTGAATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.91

95.988

0.46
  oppD Streptococcus mutans UA159

45.86

96.914

0.444
  amiE Streptococcus thermophilus LMG 18311

46.129

95.679

0.441
  amiE Streptococcus thermophilus LMD-9

46.129

95.679

0.441