Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHB58_RS26225 Genome accession   NZ_CP130716
Coordinates   5857990..5859045 (+) Length   351 a.a.
NCBI ID   WP_371654509.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00150     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5852990..5864045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB58_RS26210 (OHB58_26145) - 5854346..5855968 (+) 1623 WP_371654507.1 ABC transporter substrate-binding protein -
  OHB58_RS26215 (OHB58_26150) - 5856115..5857041 (+) 927 WP_358836005.1 ABC transporter permease -
  OHB58_RS26220 (OHB58_26155) - 5857034..5857975 (+) 942 WP_371654508.1 ABC transporter permease -
  OHB58_RS26225 (OHB58_26160) amiE 5857990..5859045 (+) 1056 WP_371654509.1 ABC transporter ATP-binding protein Regulator
  OHB58_RS26230 (OHB58_26165) - 5859038..5860186 (+) 1149 WP_371654510.1 ABC transporter ATP-binding protein -
  OHB58_RS26235 (OHB58_26170) - 5860312..5861223 (+) 912 WP_371654511.1 GNAT family N-acetyltransferase -
  OHB58_RS26240 (OHB58_26175) - 5861334..5862962 (+) 1629 WP_371654512.1 ABC transporter substrate-binding protein -
  OHB58_RS26245 (OHB58_26180) - 5863051..5863974 (+) 924 WP_371654513.1 ABC transporter permease -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38196.27 Da        Isoelectric Point: 7.0149

>NTDB_id=787107 OHB58_RS26225 WP_371654509.1 5857990..5859045(+) (amiE) [Streptomyces sp. NBC_00150]
MTIIEKTAGVPAPRAESDSTPLLEVRDLHVEFHTRDGIAKAVNGVNYTVAAGETLAVLGESGSGKSVTAQAIMGILDMPP
GRIPQGEILFRGQDMLKMSGEERRKIRGQKIAMIFQDALSSLNPVLTVGYQLGEMFRVHQGASRKVAKAKSIELMDKVKI
PAAAARVNDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREFQMGLILITHDLGVVADV
ADKIAVMYAGRIVETAPVHELYKRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLKVPAGCAFNPRCPKADDICRTD
APVLHQVTERDGAELTGRGSACHFWKETIHG

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=787107 OHB58_RS26225 WP_371654509.1 5857990..5859045(+) (amiE) [Streptomyces sp. NBC_00150]
ATGACCATCATTGAGAAAACGGCGGGTGTACCCGCCCCGCGCGCCGAGAGCGACAGCACTCCGCTCCTGGAAGTCCGCGA
TCTGCACGTCGAGTTCCACACCCGGGACGGCATCGCCAAGGCCGTCAACGGTGTCAACTACACCGTCGCGGCCGGCGAGA
CCCTCGCCGTCCTCGGCGAGTCCGGCTCCGGAAAGTCCGTGACCGCGCAGGCGATCATGGGCATCCTGGACATGCCCCCG
GGCCGCATTCCGCAGGGCGAGATCCTCTTCCGCGGCCAGGACATGCTGAAGATGTCCGGCGAGGAGCGGCGGAAGATCCG
CGGCCAGAAGATCGCGATGATCTTCCAGGACGCGCTCTCCTCCCTCAACCCGGTCCTCACCGTGGGCTACCAGCTCGGCG
AGATGTTCCGGGTCCACCAGGGCGCCTCCCGCAAGGTGGCCAAGGCCAAGTCCATCGAGCTGATGGACAAGGTCAAGATC
CCCGCGGCCGCCGCGCGGGTCAACGACTACCCCCACCAGTTCTCCGGGGGTATGCGCCAGCGCATCATGATCGCGATGGC
GCTCGCCCTGGAGCCCGACCTGATCATCGCGGACGAGCCGACCACCGCGCTCGACGTGACGGTCCAGGCCCAGGTCATGG
ACCTGCTCGCGGAGCTCCAGCGCGAGTTCCAGATGGGTCTGATCCTGATCACCCACGACCTCGGCGTGGTCGCCGACGTC
GCGGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTGGAGACCGCACCGGTGCACGAGCTGTACAAGCGCCCGGCGCA
CCCGTACACCCGGGGTCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTGTACGCGATCAAGGGTCTGC
CGCCCAACCTGCTGAAGGTCCCGGCCGGTTGCGCCTTCAACCCGCGCTGCCCCAAGGCGGACGACATCTGCCGTACGGAC
GCGCCGGTGCTGCACCAGGTCACCGAACGGGACGGCGCGGAGCTGACCGGCCGCGGCAGCGCCTGCCACTTCTGGAAGGA
GACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(43-201)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(253-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50

89.459

0.447
  amiE Streptococcus thermophilus LMG 18311

51.536

83.476

0.43
  amiE Streptococcus thermophilus LMD-9

51.536

83.476

0.43
  oppD Streptococcus mutans UA159

47.727

87.749

0.419