Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHB58_RS15080 Genome accession   NZ_CP130716
Coordinates   3354571..3356502 (+) Length   643 a.a.
NCBI ID   WP_371652584.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00150     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3349571..3361502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB58_RS15065 (OHB58_15020) - 3350763..3351077 (+) 315 WP_371652581.1 YtxH domain-containing protein -
  OHB58_RS15070 (OHB58_15025) - 3351177..3352622 (+) 1446 WP_371652582.1 FGGY family carbohydrate kinase -
  OHB58_RS15075 (OHB58_15030) rcrP 3352841..3354574 (+) 1734 WP_371652583.1 ABC transporter ATP-binding protein Regulator
  OHB58_RS15080 (OHB58_15035) rcrQ 3354571..3356502 (+) 1932 WP_371652584.1 ABC transporter ATP-binding protein Regulator
  OHB58_RS15085 (OHB58_15040) - 3356543..3357775 (-) 1233 WP_371652585.1 RNA polymerase sigma factor -
  OHB58_RS15090 (OHB58_15045) dnaG 3357961..3359853 (-) 1893 WP_371652586.1 DNA primase -
  OHB58_RS15095 (OHB58_15050) - 3359893..3361173 (-) 1281 WP_371652587.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69707.01 Da        Isoelectric Point: 5.4496

>NTDB_id=787080 OHB58_RS15080 WP_371652584.1 3354571..3356502(+) (rcrQ) [Streptomyces sp. NBC_00150]
MSGNMARMMGQGDGKRSMDFKGSSKRLLRQLAPEKGTLYVMVVAAVLSVALSVVGPKILGKATDLVFAGVVGRQMPDGTT
KEQALDRLREKGDGGLADMLSGVDFTPGHGIDFGSVGGVLLWALAVYVGAGLLMLVATRLSNRAINRTVFRMREQVQAKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLAMMFWISPLLALVALATVPLSVVVATKIGKR
SQPQFVQQWKTTGRLNAHVEEMYTGHTLVKVFGRQEESARQFDEQNEALYEAGFKAQFNSGVMQPLMMFISNLNYVLVAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEPEPDAQSAERPVERRGAVTL
EKVAFRYDPQKPLIDDLSLKVEPGQTVAIVGPTGAGKTTLVNLLMRFYDVTDGRITLDGVDAARMSREELRSGIGMVLQD
TWLFGGTIADNIAYGASRPVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAADGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=787080 OHB58_RS15080 WP_371652584.1 3354571..3356502(+) (rcrQ) [Streptomyces sp. NBC_00150]
ATGAGCGGAAACATGGCCCGGATGATGGGTCAGGGCGACGGCAAACGCTCGATGGACTTCAAGGGCTCCTCGAAGCGGCT
GCTGCGGCAACTCGCCCCGGAGAAGGGCACGCTCTATGTGATGGTCGTCGCCGCGGTGCTCAGCGTCGCGCTGTCGGTGG
TCGGGCCGAAGATCCTCGGCAAGGCGACCGACCTGGTCTTCGCAGGCGTCGTCGGCCGGCAGATGCCGGACGGGACGACC
AAGGAGCAGGCTCTCGACCGGCTGCGCGAGAAGGGCGACGGCGGGCTCGCCGACATGCTCTCCGGGGTGGACTTCACCCC
CGGCCACGGCATCGACTTCGGCTCGGTCGGCGGGGTGCTGCTCTGGGCGCTCGCGGTGTACGTGGGCGCGGGGCTGCTGA
TGCTGGTGGCGACCCGGCTCTCCAACCGGGCGATCAACCGCACGGTGTTCCGGATGCGCGAGCAGGTGCAGGCGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGCGCCAAGCGCGGCGAGGTGCTCAGCCGCGCCACCAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCACTGCTCACCATCGTCGGCGTGCTCGCGATGATGTTCT
GGATCTCGCCGCTGCTCGCCCTGGTGGCGCTGGCGACCGTACCGCTGTCGGTGGTCGTCGCGACGAAGATCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGACCACGGGCCGGCTCAACGCGCACGTGGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGCCAGGAGGAGTCGGCGCGGCAGTTCGACGAGCAGAACGAGGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGCTGATGATGTTCATCTCGAACCTGAACTACGTCCTGGTCGCGGTC
GTCGGCGGGCTGCGGGTCGCCTCCGGCGCGCTGTCGATCGGCGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTCACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGGGTCGCCTCCGCCGAGCGGATCTTCGAACTGC
TCGACGCGGACGAGCAGGAGCCGGAGCCGGACGCGCAGTCGGCCGAGCGGCCGGTGGAGCGGCGCGGCGCGGTGACGCTG
GAGAAGGTGGCGTTCCGCTACGACCCGCAGAAGCCGCTCATCGACGACCTGTCGCTGAAGGTCGAGCCGGGCCAGACGGT
CGCGATCGTCGGCCCGACCGGCGCGGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGACGTGACGGACGGGC
GGATCACCCTGGACGGGGTGGACGCGGCCCGGATGTCGCGCGAGGAGCTGCGCTCGGGCATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGCACCATCGCGGACAACATCGCGTACGGGGCGTCGCGGCCGGTCACCCGCGAGGAGATCGAGGA
GGCGGCCCGGGCCGCCCACGCGGACCGGTTCGTACGGACGCTGCCGGACGGCTACGACACAGTGATCGACGACGAGGGTA
CGGGGGTGAGCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGAC
GAGGCGACGAGTTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCCCACGGGCGCACGAG
CTTTGTGATCGCCCACCGGCTGTCGACCATTCGCGACGCCGACGTGATCCTGGTGATGGAGAACGGGTCCATCGTCGAAC
AGGGCACGCACGACGAGCTGCTGGCGGCGGACGGGGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCG
GAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.385

97.045

0.392