Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB58_RS15075 Genome accession   NZ_CP130716
Coordinates   3352841..3354574 (+) Length   577 a.a.
NCBI ID   WP_371652583.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00150     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3347841..3359574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB58_RS15045 (OHB58_15000) - 3348679..3349428 (-) 750 WP_371652580.1 class I SAM-dependent methyltransferase -
  OHB58_RS15065 (OHB58_15020) - 3350763..3351077 (+) 315 WP_371652581.1 YtxH domain-containing protein -
  OHB58_RS15070 (OHB58_15025) - 3351177..3352622 (+) 1446 WP_371652582.1 FGGY family carbohydrate kinase -
  OHB58_RS15075 (OHB58_15030) rcrP 3352841..3354574 (+) 1734 WP_371652583.1 ABC transporter ATP-binding protein Regulator
  OHB58_RS15080 (OHB58_15035) rcrQ 3354571..3356502 (+) 1932 WP_371652584.1 ABC transporter ATP-binding protein Regulator
  OHB58_RS15085 (OHB58_15040) - 3356543..3357775 (-) 1233 WP_371652585.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62628.67 Da        Isoelectric Point: 5.7142

>NTDB_id=787079 OHB58_RS15075 WP_371652583.1 3352841..3354574(+) (rcrP) [Streptomyces sp. NBC_00150]
MLIRLLRTHLVPYKKPIALLVLLQLLQTCATLYLPTLNADIIDNGVVGGDTGYILEFGGIMIAVSLVQVVCNVGAVYFGA
RTASAVGRDMRAAVFGRVQSFSSREVGHFGAPTLITRTTNDVQQVQMLTLMSFTLMVSAPIMCFGGIIMALGQDVPLSAV
LLAVVPVLGISVSLIVRRMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVKDDYEKNRFKGANTELTDVSLGTGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRIDSGSLQIGQLTAFLTYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLATDTSVVP
PLSPVRELRRSGHLEVRGADFTYPGAEESVLNGVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGTVLVDGEDVR
GIDPVLLAKTVSMVPQKPYLFSGTVATNLRYGNPDATDDDLWHALEVAQAKEFVSELEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALLHETREATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=787079 OHB58_RS15075 WP_371652583.1 3352841..3354574(+) (rcrP) [Streptomyces sp. NBC_00150]
GTGCTCATACGACTCCTGCGGACCCATCTGGTTCCGTACAAGAAACCGATCGCGCTCCTGGTGCTGCTGCAGCTGCTCCA
GACGTGCGCGACCCTCTATCTGCCGACCCTGAACGCCGACATCATCGACAACGGTGTCGTCGGCGGGGACACCGGTTACA
TCCTGGAGTTCGGCGGCATCATGATCGCCGTCAGCCTGGTCCAGGTGGTCTGCAACGTCGGCGCCGTCTACTTCGGCGCA
CGCACCGCGTCCGCCGTGGGCCGGGACATGCGGGCGGCCGTCTTCGGGCGCGTCCAGTCGTTCTCCTCGCGCGAGGTGGG
CCACTTCGGGGCGCCGACCCTGATCACCCGGACCACCAACGACGTACAGCAGGTCCAGATGCTGACGCTGATGTCGTTCA
CGCTGATGGTGTCCGCGCCCATCATGTGCTTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTGTCGGCGGTG
CTGCTGGCCGTGGTGCCGGTGCTCGGCATCTCCGTCTCGCTGATCGTGCGCAGGATGCGACCGCTGTTCCGCACCATGCA
GACCCGCCTGGACACGGTGAACCGCGTACTGCGCGAGCAGATCACCGGCAACCGTGTGATCAGGGCGTTCGTGAAGGACG
ACTACGAGAAGAACCGCTTCAAGGGCGCCAACACCGAGCTGACGGACGTCTCCCTGGGCACCGGCCGGCTGATGGCGCTG
ATGTTCCCCACGGTCATGACGGTGGTCAACGTCTCCTCGGTGGCCGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CTCCCTGCAGATCGGCCAGCTCACCGCGTTCCTCACGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACGTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTCGCCACCGACACCAGTGTGGTCCCG
CCGCTCTCGCCGGTGCGCGAGCTGCGCCGCAGCGGCCATCTGGAGGTCCGCGGCGCCGACTTCACCTACCCGGGCGCGGA
GGAGTCCGTCCTGAACGGGGTGGACCTGGTGGCCCGTCCCGGCGAGACCACCGCGATCATCGGGTCTACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTGGTGCCGCGGCTGTTCGACGTGACGGACGGCACGGTCCTGGTCGACGGCGAGGACGTGCGC
GGAATCGATCCCGTACTGCTCGCCAAGACCGTGTCGATGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
CAATCTGCGGTACGGCAACCCCGACGCCACCGACGACGACCTGTGGCACGCCCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TCTCCGAGCTGGAGGGCGGGCTCAACGCGCCGATCGCGCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGCCAGCGGCTC
GCGATCGCGCGGACCCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTCGACTACGCGACGGA
CGCGGCCCTGCGGGCGGCGCTGCTGCACGAGACGCGCGAGGCGACCGTCGTGATCGTGGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCGTCGTCCTGGACGAGGGCCGGGTCGTCGGCACCGGCCGCCACCACGAGCTGATGGCCGAGAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCCGAGGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.137

100

0.406