Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PSR59_RS07950 Genome accession   NZ_CP117692
Coordinates   1609258..1611063 (+) Length   601 a.a.
NCBI ID   WP_039121086.1    Uniprot ID   A0AAQ3ARK8
Organism   Ligilactobacillus ruminis strain CACC888     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1604258..1616063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR59_RS07925 (PSR59_07925) nrdG 1604903..1605589 (+) 687 WP_046921146.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  PSR59_RS07930 (PSR59_07930) - 1605936..1606496 (-) 561 WP_046921145.1 M15 family metallopeptidase -
  PSR59_RS07935 (PSR59_07935) spxA 1606811..1607209 (+) 399 WP_273744784.1 transcriptional regulator SpxA -
  PSR59_RS07940 (PSR59_07940) - 1607322..1608098 (+) 777 WP_170089494.1 adaptor protein MecA -
  PSR59_RS07945 (PSR59_07945) - 1608249..1609169 (+) 921 WP_273744785.1 competence protein CoiA -
  PSR59_RS07950 (PSR59_07950) pepF 1609258..1611063 (+) 1806 WP_039121086.1 oligoendopeptidase F Regulator
  PSR59_RS07955 (PSR59_07955) - 1611104..1611751 (-) 648 WP_080926528.1 ClpXP adapter SpxH family protein -
  PSR59_RS07960 (PSR59_07960) - 1612078..1612767 (+) 690 WP_080926529.1 GTP pyrophosphokinase -
  PSR59_RS07965 (PSR59_07965) - 1612764..1613570 (+) 807 WP_080926530.1 NAD kinase -
  PSR59_RS07970 (PSR59_07970) - 1613560..1614465 (+) 906 WP_046921139.1 RluA family pseudouridine synthase -
  PSR59_RS07975 (PSR59_07975) mgtE 1614471..1615841 (+) 1371 WP_039121079.1 magnesium transporter -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69491.79 Da        Isoelectric Point: 4.7587

>NTDB_id=787035 PSR59_RS07950 WP_039121086.1 1609258..1611063(+) (pepF) [Ligilactobacillus ruminis strain CACC888]
MAEVKQLPKREEVPVELTWDLTKIYATDTDFEADFAKVKKEAESFKKYQGKLKENGDTLLEAIKEMFAIQRRLENVYVYA
SMKNDQDTANAENQAKNATVQKLVAEVSEKLSWFQPELLHLTIEELEEAKKQAPELNEYSQNLREWFEMKDHVLSDKEEA
LLAGASDIFSAPESTFEVLNDADLKFPVMKDENGDDVELSEGIYGTLLESTDRRVRKEAFQNLYKVYRQFRHTFAMTLSS
HNRTENYVAKVRNYSTAQEAALANNHIPVSVYDTLINVTNKHLPLLHRYVALRKKLLNLDEVHMYDLYTPITGEPTLKYT
YDEAKEEALKALAVLGDDYLSHVKEAFDNRWIDVVANQGKRGGAYSGGSYDTAPYILLNWQDTLDNLFTLVHEMGHTIHS
YYTRHNQPYQYGDYSIFVAEIASTTNENLLTQYLLDHFEDKKVKAYVLNHYLDGFKGTVFRQTQFAEFEKWSHEQDAAGK
PLTADVISKYYGELNKRYYGPDIFNDDEISLEWARIPHFYYNYYVYQYATGFAAATTLAQNILNDNPADTQAYLTYLKSG
SSEYPIDIMKKAGVDMTNEEYLEKAFDVFEKRLNELEKLIG

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=787035 PSR59_RS07950 WP_039121086.1 1609258..1611063(+) (pepF) [Ligilactobacillus ruminis strain CACC888]
ATGGCTGAAGTAAAACAACTTCCAAAACGTGAAGAAGTTCCGGTTGAACTGACATGGGATCTCACGAAAATTTATGCTAC
GGATACGGACTTCGAAGCAGATTTTGCCAAAGTAAAAAAAGAAGCGGAGAGTTTCAAAAAATATCAGGGCAAGCTGAAGG
AAAACGGAGATACCTTGCTCGAAGCAATTAAAGAAATGTTTGCGATTCAAAGGCGTCTTGAGAATGTTTATGTTTATGCA
AGCATGAAGAATGATCAAGATACTGCCAATGCTGAAAATCAAGCCAAGAACGCAACCGTTCAAAAACTTGTGGCCGAAGT
TTCGGAAAAACTTTCCTGGTTTCAACCGGAGCTCTTGCATTTGACGATTGAAGAGCTTGAGGAGGCAAAGAAGCAGGCAC
CGGAACTTAACGAATATTCACAAAATCTCAGAGAATGGTTTGAGATGAAAGATCACGTCTTAAGCGACAAAGAAGAAGCA
TTGCTTGCCGGTGCGAGCGACATCTTCAGTGCACCTGAAAGCACTTTTGAAGTTTTGAACGATGCTGATTTGAAATTCCC
TGTCATGAAGGACGAAAACGGTGATGACGTTGAGCTTTCAGAAGGAATCTACGGAACGTTGCTCGAATCGACGGATCGTC
GCGTTCGCAAAGAAGCTTTCCAAAATTTGTATAAGGTTTATCGCCAGTTTCGTCATACGTTTGCTATGACGCTGTCTTCA
CACAACAGGACCGAAAATTACGTTGCCAAAGTCAGAAATTACTCAACTGCACAAGAGGCAGCTTTGGCAAACAATCACAT
CCCGGTCTCTGTTTATGATACGCTTATCAATGTAACGAATAAGCATTTGCCTTTGCTGCATCGCTACGTTGCGCTCAGGA
AGAAATTGCTCAATCTTGACGAGGTGCATATGTATGATCTGTATACGCCGATCACGGGCGAGCCGACCCTCAAATATACG
TATGATGAAGCCAAGGAAGAAGCATTAAAAGCATTGGCTGTTTTAGGTGACGATTATCTTTCTCACGTTAAAGAAGCTTT
TGACAATCGTTGGATTGATGTTGTGGCAAATCAGGGCAAGCGCGGCGGAGCGTACTCTGGCGGATCTTACGATACTGCCC
CGTACATTTTGCTCAATTGGCAGGATACGCTTGATAATTTGTTTACGCTTGTACATGAAATGGGACATACGATTCACAGC
TACTATACTCGTCATAATCAACCTTATCAATACGGGGATTATTCAATTTTTGTTGCTGAAATTGCTTCAACGACAAACGA
AAACTTATTGACGCAATATTTGCTTGATCATTTTGAAGACAAAAAAGTTAAAGCATATGTTTTAAATCACTATCTCGATG
GTTTCAAGGGAACGGTTTTCCGTCAGACGCAATTTGCTGAATTTGAAAAATGGTCCCATGAACAAGACGCTGCAGGCAAG
CCGCTGACTGCCGATGTTATCAGCAAGTACTATGGCGAGTTAAATAAGCGTTACTACGGGCCTGATATTTTTAATGACGA
TGAAATTTCGCTTGAATGGGCACGAATTCCTCATTTTTACTATAACTATTACGTCTATCAATATGCAACGGGATTTGCTG
CTGCAACGACTTTGGCACAAAATATCCTAAATGATAATCCTGCCGATACGCAAGCATATCTGACATATTTGAAGTCAGGA
TCGAGCGAATATCCAATTGACATCATGAAAAAAGCTGGCGTTGATATGACGAATGAAGAGTATCTTGAAAAAGCATTTGA
TGTCTTTGAAAAACGACTAAATGAATTGGAGAAACTCATTGGTTGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.976

98.336

0.531