Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG472_RS28510 Genome accession   NZ_CP130715
Coordinates   5998544..5999518 (+) Length   324 a.a.
NCBI ID   WP_405942203.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00207     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5993544..6004518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG472_RS28490 (OG472_28405) - 5993888..5994814 (+) 927 WP_405831854.1 GNAT family N-acetyltransferase -
  OG472_RS28495 (OG472_28410) - 5994921..5996552 (+) 1632 WP_401606818.1 ABC transporter substrate-binding protein -
  OG472_RS28500 (OG472_28415) - 5996584..5997507 (+) 924 WP_383576347.1 ABC transporter permease -
  OG472_RS28505 (OG472_28420) - 5997500..5998531 (+) 1032 WP_401606815.1 ABC transporter permease -
  OG472_RS28510 (OG472_28425) amiE 5998544..5999518 (+) 975 WP_405942203.1 ABC transporter ATP-binding protein Regulator
  OG472_RS28515 (OG472_28430) - 5999511..6000554 (+) 1044 WP_401606810.1 ABC transporter ATP-binding protein -
  OG472_RS28520 (OG472_28435) - 6000948..6001142 (+) 195 WP_361770372.1 hypothetical protein -
  OG472_RS28525 (OG472_28440) mshB 6001166..6002062 (+) 897 WP_401606808.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  OG472_RS28530 (OG472_28445) - 6002059..6002445 (+) 387 WP_405831858.1 DUF6113 family protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35367.28 Da        Isoelectric Point: 7.0248

>NTDB_id=787022 OG472_RS28510 WP_405942203.1 5998544..5999518(+) (amiE) [Streptomyces sp. NBC_00207]
MLLEVRDLHVEFKTRDGVAKAVNGVDYSVDEGETLAVLGESGSGKSVTAQAVMGILDMPPGRIAGGEILFKGKDLLKMKE
EERRRIRGADMAMIFQDALSSLNPVLSVGKQLGEMYEVHRGMSRKDARAKAVELMERVKIPAAKQRVGDFPHQFSGGMRQ
RIMIAMALALEPSLIIADEPTTALDVTVQAQVMDLLGELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVEAAPVHE
IYKAPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLAIPQGCAFNPRCPMAQARCRAEVPPLAQVAGERTSACFFWKE
CLRG

Nucleotide


Download         Length: 975 bp        

>NTDB_id=787022 OG472_RS28510 WP_405942203.1 5998544..5999518(+) (amiE) [Streptomyces sp. NBC_00207]
ATGCTGCTCGAAGTCCGCGACCTGCACGTGGAATTCAAGACGCGCGACGGAGTCGCGAAGGCGGTCAACGGTGTCGACTA
CTCGGTGGACGAGGGCGAGACGCTCGCCGTGCTCGGCGAGTCCGGTTCCGGCAAGTCGGTGACCGCCCAGGCCGTGATGG
GGATCCTCGACATGCCGCCGGGCCGGATCGCGGGCGGCGAGATCCTCTTCAAGGGCAAGGACCTCCTCAAGATGAAGGAG
GAGGAGCGGCGCAGAATCCGCGGCGCCGATATGGCGATGATCTTCCAGGACGCGCTCTCCTCCCTGAACCCGGTGCTGAG
CGTGGGCAAGCAGCTCGGCGAGATGTACGAGGTCCACCGCGGGATGTCCCGCAAGGACGCCAGGGCCAAGGCCGTCGAGC
TGATGGAGCGGGTGAAGATCCCGGCGGCGAAGCAGCGGGTGGGGGACTTCCCGCACCAGTTCTCGGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGCTGGCCCTGGAGCCCTCGCTGATCATCGCGGACGAGCCGACGACGGCCCTCGACGTGAC
CGTCCAGGCCCAGGTGATGGACCTCCTGGGCGAGCTGCAGCGCGAGCTCAACATGGGCCTCATCCTGATCACCCACGACC
TGGGCGTGGTCGCCGACGTGGCCGACAAGATCGCCGTCATGTACGCGGGCCGGATCGTCGAGGCGGCCCCCGTCCACGAG
ATCTACAAGGCGCCCGCCCACCCGTACACGCGCGGACTGCTGGATTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCCATCAAGGGCCTGCCGCCGAACCTGCTGGCCATCCCGCAGGGCTGCGCCTTCAACCCGCGCTGTCCGATGGCCC
AGGCCCGCTGCCGCGCCGAGGTCCCGCCGCTCGCGCAGGTCGCCGGGGAACGGACCAGTGCGTGCTTCTTCTGGAAGGAG
TGCCTCCGTGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.352

99.074

0.469
  amiE Streptococcus thermophilus LMG 18311

47.352

99.074

0.469
  amiE Streptococcus thermophilus LMD-9

47.352

99.074

0.469
  oppD Streptococcus mutans UA159

47.785

97.531

0.466