Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG472_RS28480 Genome accession   NZ_CP130715
Coordinates   5991601..5992692 (+) Length   363 a.a.
NCBI ID   WP_401606821.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00207     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5986601..5997692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG472_RS28465 (OG472_28380) - 5987865..5989520 (+) 1656 WP_401606823.1 ABC transporter substrate-binding protein -
  OG472_RS28470 (OG472_28385) - 5989778..5990644 (+) 867 WP_383576332.1 ABC transporter permease -
  OG472_RS28475 (OG472_28390) - 5990668..5991591 (+) 924 WP_383576335.1 ABC transporter permease -
  OG472_RS28480 (OG472_28395) amiE 5991601..5992692 (+) 1092 WP_401606821.1 ABC transporter ATP-binding protein Regulator
  OG472_RS28485 (OG472_28400) - 5992685..5993737 (+) 1053 WP_383576338.1 ABC transporter ATP-binding protein -
  OG472_RS28490 (OG472_28405) - 5993888..5994814 (+) 927 WP_405831854.1 GNAT family N-acetyltransferase -
  OG472_RS28495 (OG472_28410) - 5994921..5996552 (+) 1632 WP_401606818.1 ABC transporter substrate-binding protein -
  OG472_RS28500 (OG472_28415) - 5996584..5997507 (+) 924 WP_383576347.1 ABC transporter permease -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39310.28 Da        Isoelectric Point: 6.5892

>NTDB_id=787020 OG472_RS28480 WP_401606821.1 5991601..5992692(+) (amiE) [Streptomyces sp. NBC_00207]
MPRDNISKQDEGGGVTTSEILSVAETGGGSAVPLLEVDNLQVEFKTRDGVAKAVNGVSYSVNAGETLAVLGESGSGKSVT
AQAIMGILDSPPGRIAGGEVRFHGKDILKMSDEERRKLRGNKMAMIFQDALSSLNPVYSVGDQLGEMFRVHRGMSKKDSK
VKAIELMDRVKIPAAKARVGDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREMNMGLI
LITHDLGVVADVADKIAVMYAGRIVETAPVHEIYKRPSHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLRIPAGCAFSP
RCPKAQDICRTEIPVLHPVTEQDGTELPGRGSACHFWKEQIHG

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=787020 OG472_RS28480 WP_401606821.1 5991601..5992692(+) (amiE) [Streptomyces sp. NBC_00207]
ATGCCCCGAGACAACATCAGCAAGCAGGACGAAGGTGGCGGCGTGACGACGTCGGAGATTCTCAGCGTTGCGGAGACGGG
TGGCGGTTCCGCCGTGCCGCTGCTGGAGGTGGACAACCTCCAGGTCGAGTTCAAGACCCGTGACGGGGTCGCCAAGGCCG
TCAACGGCGTGAGCTACAGCGTCAACGCCGGCGAGACCCTCGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCCGTCACC
GCACAGGCGATCATGGGCATTCTCGACAGCCCGCCCGGACGGATCGCCGGCGGCGAGGTGCGCTTCCACGGCAAGGACAT
CCTCAAGATGTCCGACGAGGAGCGCCGCAAGCTCCGCGGCAACAAGATGGCGATGATCTTCCAGGACGCGCTGTCCTCCC
TGAACCCGGTCTACTCGGTGGGCGACCAGCTCGGCGAGATGTTCCGGGTCCACCGCGGCATGTCCAAGAAGGACTCGAAG
GTCAAGGCCATCGAGCTCATGGACCGCGTGAAGATCCCCGCCGCCAAGGCGCGCGTGGGCGACTACCCGCACCAGTTCTC
CGGCGGTATGCGCCAGCGCATCATGATCGCCATGGCGCTGGCCCTGGAGCCGGACCTGATCATCGCCGACGAGCCCACCA
CGGCTCTCGACGTGACGGTCCAGGCGCAGGTCATGGACCTGCTCGCCGAGCTCCAGCGCGAGATGAACATGGGCCTGATC
CTGATCACCCACGACCTCGGCGTCGTCGCCGACGTCGCGGACAAGATCGCGGTCATGTACGCGGGCCGGATCGTCGAGAC
CGCTCCGGTCCACGAGATCTACAAGCGCCCGTCCCACCCGTACACCCGCGGCCTGCTCGACTCGATCCCGCGCCTGGACC
AGAAGGGCCAGGAGCTCTACGCGATCAAGGGTCTGCCGCCCAACCTGCTCCGCATTCCCGCGGGCTGCGCCTTCAGCCCC
CGCTGTCCCAAGGCGCAGGACATCTGCCGTACGGAGATCCCCGTACTGCACCCCGTCACCGAGCAGGACGGCACCGAACT
GCCCGGCCGCGGCAGCGCGTGCCACTTCTGGAAGGAGCAGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(55-213)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(265-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

49.662

81.543

0.405
  amiE Streptococcus thermophilus LMG 18311

49.662

81.543

0.405
  amiE Streptococcus thermophilus LMD-9

49.662

81.543

0.405
  oppD Streptococcus mutans UA159

46.753

84.848

0.397