Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PSR56_RS16475 Genome accession   NZ_CP117689
Coordinates   3179483..3180433 (-) Length   316 a.a.
NCBI ID   WP_028414467.1    Uniprot ID   A0AAX6BLZ5
Organism   Priestia megaterium strain GEB3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3174483..3185433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR56_RS16450 (PSR56_16450) - 3175244..3175384 (-) 141 WP_176343797.1 hypothetical protein -
  PSR56_RS16455 (PSR56_16455) - 3175638..3176492 (-) 855 WP_047750489.1 manganese catalase family protein -
  PSR56_RS16460 (PSR56_16460) - 3176811..3177767 (-) 957 WP_033580631.1 siderophore ABC transporter substrate-binding protein -
  PSR56_RS16465 (PSR56_16465) - 3177791..3178549 (-) 759 WP_028414465.1 ABC transporter ATP-binding protein -
  PSR56_RS16470 (PSR56_16470) - 3178543..3179490 (-) 948 WP_034267834.1 iron chelate uptake ABC transporter family permease subunit -
  PSR56_RS16475 (PSR56_16475) ceuB 3179483..3180433 (-) 951 WP_028414467.1 ABC transporter permease Machinery gene
  PSR56_RS16480 (PSR56_16480) - 3180664..3180798 (-) 135 WP_255219778.1 hypothetical protein -
  PSR56_RS16485 (PSR56_16485) - 3181037..3181843 (-) 807 WP_310883944.1 cell wall hydrolase -
  PSR56_RS16490 (PSR56_16490) - 3182206..3182460 (+) 255 WP_013057893.1 hypothetical protein -
  PSR56_RS16495 (PSR56_16495) - 3182542..3182706 (-) 165 WP_013057894.1 hypothetical protein -
  PSR56_RS16500 (PSR56_16500) - 3183040..3183369 (-) 330 WP_057244395.1 hypothetical protein -
  PSR56_RS16505 (PSR56_16505) - 3183413..3184444 (-) 1032 WP_310883945.1 zinc-binding dehydrogenase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34953.16 Da        Isoelectric Point: 9.9188

>NTDB_id=786984 PSR56_RS16475 WP_028414467.1 3179483..3180433(-) (ceuB) [Priestia megaterium strain GEB3]
MKFYQLILVFAVLAVSSLFVGVQDLSAMDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMRILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYLYADKFTVAGMGESFSINLGVKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPHTAVLGAVFVLACDILGRVIIFPYEVSIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=786984 PSR56_RS16475 WP_028414467.1 3179483..3180433(-) (ceuB) [Priestia megaterium strain GEB3]
TTGAAGTTTTATCAGTTAATTCTTGTGTTTGCTGTACTAGCGGTTTCGTCTCTTTTTGTAGGAGTACAAGACCTGTCAGC
GATGGATCTGTTTCATTTAACAAAAGAAGAAAGCCAAACGCTGTTTTTTAGTCGTTTTCCTAGGCTTTTGAGTATTATTA
TGGCGGGAATGAGCCTTAGTATTTGCGGGTTAATTATGCAGCAAATTACGCGAAATAAGTTTGTCTCACCAACAACTGCA
GGAACGATGGACTGGGCAAGACTTGGTGTGTTGATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCTTTCATTTTCTCACTTGCGGGCAATCTATTGTTTATGAGAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCACTAGTTGGTTTAATGCTCGGCAGTATCGTAAGTTCCCTAGCTACCTTCATCGCTTACAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGACTTTTCGCTAGTAGTCAAAGGGCGATATGAACTTTTATACCTGAGTATACC
GCTCTTAATAATTGCTTATCTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCTTTTCAATCAATTTAGGCG
TGAAATACAAACAAATCGTAAACATTGGATTAGTCATTGTTTCGCTTATTACGTCGATTACGATTTTGACCGTTGGCATG
CTGCCTTTTTTAGGATTAATCATCCCAAATATCGTATCGATTTACCGTGGAGATCATTTGCGAAAAAGCCTGCCTCATAC
AGCGGTGCTTGGAGCTGTATTCGTACTTGCGTGCGATATTTTAGGCAGAGTCATTATTTTCCCTTATGAAGTTTCTATTG
GGTTAATGGTCGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.333

94.937

0.497