Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG202_RS34350 Genome accession   NZ_CP130714
Coordinates   7825487..7826557 (-) Length   356 a.a.
NCBI ID   WP_328224752.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00310     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7820487..7831557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG202_RS34340 (OG202_34375) - 7821602..7824535 (+) 2934 WP_328224074.1 AAA family ATPase -
  OG202_RS34345 (OG202_34380) - 7824807..7825490 (-) 684 WP_326577057.1 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein -
  OG202_RS34350 (OG202_34385) amiE 7825487..7826557 (-) 1071 WP_328224752.1 ABC transporter ATP-binding protein Regulator
  OG202_RS34355 (OG202_34390) - 7826544..7828331 (-) 1788 WP_328224075.1 ABC transporter permease subunit -
  OG202_RS34360 (OG202_34395) - 7828328..7829824 (-) 1497 WP_328224076.1 ABC transporter substrate-binding protein -
  OG202_RS34365 (OG202_34400) - 7829985..7831187 (-) 1203 WP_328224077.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37999.01 Da        Isoelectric Point: 6.5753

>NTDB_id=786953 OG202_RS34350 WP_328224752.1 7825487..7826557(-) (amiE) [Streptomyces sp. NBC_00310]
MPESDVPPSSDVLPSSDVLLSVRGLRIAFDEVEAVRGLSFDVRPREVLALVGESGAGKSLTARALLGMLPKGATTSGTVR
LRGDTDVAAQRGRRIALVPQDALAALSPVHPVGDQLAAAVRSVAGVSRKEARARAVAALDRVGIPDAVRRARAYPHEYSG
GMRQRAVIAMATINEPDVVVADEPTTALDAELRDQVLRVLGEQREAVGAALVLVTHDLGVVREHADRVLVMYAGRQVEQG
PATRVLGRPRAPYTAGLLASLPPDGDDVDHDKGEGRHGDPHPAGRRRRRLPSIPGSPPTPDALPSGCAFAPRCPLVEDHC
HREEPRSWAAGDGHEVSCHRWDEVPYPATELFQEPV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=786953 OG202_RS34350 WP_328224752.1 7825487..7826557(-) (amiE) [Streptomyces sp. NBC_00310]
CTGCCGGAGTCTGACGTACCGCCGAGTTCGGATGTATTGCCGAGTTCTGACGTACTGCTGTCGGTCCGCGGGCTGCGGAT
CGCGTTCGACGAGGTGGAGGCCGTACGCGGGCTGTCCTTCGACGTCCGGCCGCGCGAAGTGCTCGCGCTGGTCGGCGAGT
CGGGCGCGGGCAAGTCCCTCACGGCCCGAGCGCTGCTCGGGATGCTGCCCAAGGGGGCGACGACGAGCGGAACCGTGCGG
CTGCGCGGTGACACGGATGTCGCCGCCCAGCGCGGCCGCCGTATCGCCCTCGTCCCCCAGGACGCCCTCGCCGCCCTGTC
CCCGGTGCATCCCGTGGGCGACCAACTCGCCGCCGCCGTACGGTCGGTGGCGGGCGTCTCGCGCAAGGAGGCCCGCGCCC
GGGCGGTCGCCGCGCTCGACCGGGTGGGGATCCCCGACGCCGTACGCAGGGCGCGGGCGTATCCGCACGAGTACTCCGGC
GGTATGCGCCAGCGGGCCGTGATCGCCATGGCCACGATCAACGAACCGGACGTCGTCGTCGCCGACGAGCCCACGACCGC
GCTCGACGCGGAACTCCGGGATCAGGTGCTCCGGGTCCTGGGCGAGCAGCGGGAGGCGGTCGGCGCCGCGCTCGTGCTGG
TCACCCACGACCTGGGCGTGGTCCGGGAACACGCCGACCGCGTGCTGGTGATGTACGCCGGCCGCCAGGTCGAACAGGGC
CCGGCGACCCGGGTGCTGGGGCGCCCGCGAGCGCCGTACACGGCGGGCCTGCTGGCATCGCTGCCACCGGACGGCGACGA
CGTCGACCATGACAAGGGCGAGGGTCGTCACGGCGATCCGCACCCCGCCGGCCGTCGTCGTCGGCGGCTGCCCTCCATCC
CCGGGTCCCCGCCCACCCCCGACGCCCTCCCGTCGGGCTGCGCCTTCGCGCCGCGCTGCCCGCTCGTCGAGGACCACTGC
CACCGGGAGGAACCGCGGTCGTGGGCGGCCGGCGACGGCCACGAGGTCTCCTGCCACCGCTGGGACGAAGTCCCGTATCC
CGCGACCGAGTTGTTCCAGGAGCCCGTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(237-320)

ABC transporter (ABC_tran)

(36-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

39.64

93.539

0.371
  oppD Streptococcus mutans UA159

38.529

95.506

0.368
  amiE Streptococcus thermophilus LMG 18311

38.739

93.539

0.362
  amiE Streptococcus thermophilus LMD-9

38.739

93.539

0.362