Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PSR47_RS06120 Genome accession   NZ_CP117687
Coordinates   1255615..1257420 (-) Length   601 a.a.
NCBI ID   WP_039121086.1    Uniprot ID   A0AAQ3ARK8
Organism   Ligilactobacillus ruminis strain CACC881     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1250615..1262420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR47_RS06095 (PSR47_06095) mgtE 1250838..1252208 (-) 1371 WP_039121079.1 magnesium transporter -
  PSR47_RS06100 (PSR47_06100) - 1252214..1253119 (-) 906 WP_046921139.1 RluA family pseudouridine synthase -
  PSR47_RS06105 (PSR47_06105) - 1253109..1253915 (-) 807 WP_080926530.1 NAD kinase -
  PSR47_RS06110 (PSR47_06110) - 1253912..1254601 (-) 690 WP_080926529.1 GTP pyrophosphokinase -
  PSR47_RS06115 (PSR47_06115) - 1254927..1255574 (+) 648 WP_080926528.1 ClpXP adapter SpxH family protein -
  PSR47_RS06120 (PSR47_06120) pepF 1255615..1257420 (-) 1806 WP_039121086.1 oligoendopeptidase F Regulator
  PSR47_RS06125 (PSR47_06125) - 1257509..1258429 (-) 921 WP_273744785.1 competence protein CoiA -
  PSR47_RS06130 (PSR47_06130) - 1258580..1259356 (-) 777 WP_170089494.1 adaptor protein MecA -
  PSR47_RS06135 (PSR47_06135) spxA 1259469..1259867 (-) 399 WP_046921144.1 transcriptional regulator SpxA -
  PSR47_RS06140 (PSR47_06140) - 1260182..1260742 (+) 561 WP_080926526.1 M15 family metallopeptidase -
  PSR47_RS06145 (PSR47_06145) nrdG 1261098..1261784 (-) 687 WP_046921146.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69491.79 Da        Isoelectric Point: 4.7587

>NTDB_id=786945 PSR47_RS06120 WP_039121086.1 1255615..1257420(-) (pepF) [Ligilactobacillus ruminis strain CACC881]
MAEVKQLPKREEVPVELTWDLTKIYATDTDFEADFAKVKKEAESFKKYQGKLKENGDTLLEAIKEMFAIQRRLENVYVYA
SMKNDQDTANAENQAKNATVQKLVAEVSEKLSWFQPELLHLTIEELEEAKKQAPELNEYSQNLREWFEMKDHVLSDKEEA
LLAGASDIFSAPESTFEVLNDADLKFPVMKDENGDDVELSEGIYGTLLESTDRRVRKEAFQNLYKVYRQFRHTFAMTLSS
HNRTENYVAKVRNYSTAQEAALANNHIPVSVYDTLINVTNKHLPLLHRYVALRKKLLNLDEVHMYDLYTPITGEPTLKYT
YDEAKEEALKALAVLGDDYLSHVKEAFDNRWIDVVANQGKRGGAYSGGSYDTAPYILLNWQDTLDNLFTLVHEMGHTIHS
YYTRHNQPYQYGDYSIFVAEIASTTNENLLTQYLLDHFEDKKVKAYVLNHYLDGFKGTVFRQTQFAEFEKWSHEQDAAGK
PLTADVISKYYGELNKRYYGPDIFNDDEISLEWARIPHFYYNYYVYQYATGFAAATTLAQNILNDNPADTQAYLTYLKSG
SSEYPIDIMKKAGVDMTNEEYLEKAFDVFEKRLNELEKLIG

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=786945 PSR47_RS06120 WP_039121086.1 1255615..1257420(-) (pepF) [Ligilactobacillus ruminis strain CACC881]
ATGGCTGAAGTAAAACAACTTCCAAAACGTGAAGAAGTTCCGGTTGAACTGACATGGGATCTCACGAAAATTTATGCTAC
GGATACGGACTTCGAAGCAGATTTTGCCAAAGTAAAAAAAGAAGCGGAGAGTTTCAAAAAATATCAGGGCAAGCTGAAGG
AAAACGGAGATACCTTGCTCGAAGCAATTAAAGAAATGTTTGCGATTCAAAGGCGTCTTGAGAATGTTTATGTTTATGCA
AGCATGAAGAATGATCAAGATACTGCCAATGCTGAAAATCAAGCCAAGAACGCAACCGTTCAAAAACTTGTGGCCGAAGT
TTCGGAAAAACTTTCCTGGTTTCAACCGGAGCTCTTGCATTTGACGATTGAAGAGCTTGAGGAGGCAAAGAAGCAGGCAC
CGGAACTTAACGAATATTCACAAAATCTCAGAGAATGGTTTGAGATGAAAGATCACGTCTTAAGCGACAAAGAAGAAGCA
TTGCTTGCCGGTGCGAGCGACATCTTCAGTGCACCTGAAAGCACTTTTGAAGTTTTGAACGATGCTGATTTGAAATTCCC
TGTCATGAAGGACGAAAACGGTGATGACGTTGAGCTTTCAGAAGGAATCTACGGAACGTTGCTCGAATCGACGGATCGTC
GCGTTCGCAAAGAAGCTTTCCAAAATTTGTATAAGGTTTATCGCCAGTTTCGTCATACGTTTGCTATGACGCTGTCTTCA
CACAACAGGACCGAAAATTACGTTGCCAAAGTCAGAAATTACTCAACTGCACAAGAGGCAGCTTTAGCAAACAATCACAT
CCCGGTCTCTGTTTATGATACGCTTATCAATGTAACGAATAAGCATTTGCCTTTGCTGCATCGCTACGTTGCGCTCAGGA
AGAAATTGCTCAATCTTGACGAGGTGCATATGTATGATCTGTATACGCCGATCACGGGCGAGCCGACCCTCAAATATACG
TATGATGAAGCCAAGGAAGAAGCATTAAAAGCATTGGCTGTTTTAGGTGACGATTATCTTTCTCACGTTAAAGAAGCTTT
TGACAATCGTTGGATTGATGTTGTGGCAAATCAGGGCAAGCGCGGCGGAGCGTACTCTGGCGGATCTTACGATACTGCCC
CGTACATTTTGCTCAATTGGCAGGATACGCTTGATAATTTGTTTACGCTTGTACATGAAATGGGACATACGATTCACAGC
TACTATACTCGTCATAATCAACCTTATCAATACGGGGATTATTCAATTTTTGTTGCTGAAATTGCTTCAACGACAAACGA
AAACTTATTGACGCAATATTTGCTTGATCATTTTGAAGACAAAAAAGTTAAAGCATATGTTTTAAATCACTATCTCGATG
GTTTCAAGGGAACGGTTTTCCGTCAGACGCAATTTGCTGAATTTGAAAAATGGTCCCATGAACAAGACGCTGCAGGCAAG
CCGCTGACTGCCGATGTTATCAGCAAGTACTATGGCGAGCTAAATAAGCGTTACTACGGGCCTGATATTTTTAATGACGA
TGAAATTTCGCTTGAATGGGCACGAATTCCTCATTTTTACTACAACTATTACGTCTATCAATATGCAACGGGATTTGCTG
CTGCAACGACTTTGGCACAAAATATCCTAAATGATAATCCTGCCGATACGCAAGCATATCTGACATATTTGAAGTCAGGA
TCGAGCGAATATCCAATTGACATCATGAAAAAAGCTGGCGTTGATATGACGAATGAAGAGTATCTTGAAAAAGCATTTGA
TGTCTTTGAAAAACGACTAAATGAATTGGAGAAACTCATTGGTTGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.976

98.336

0.531