Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PS033_RS00405 Genome accession   NZ_CP117678
Coordinates   87952..88581 (+) Length   209 a.a.
NCBI ID   WP_059219814.1    Uniprot ID   -
Organism   Escherichia albertii strain BIA_4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 82952..93581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS033_RS00385 (PS033_00385) - 83344..85104 (-) 1761 WP_059268488.1 AAA family ATPase -
  PS033_RS00390 (PS033_00390) matP 85290..85742 (+) 453 WP_059219816.1 macrodomain Ter protein MatP -
  PS033_RS00395 (PS033_00395) ompA 85817..86869 (-) 1053 WP_024164823.1 porin OmpA -
  PS033_RS00400 (PS033_00400) sulA 87225..87734 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  PS033_RS00405 (PS033_00405) sxy/tfoX 87952..88581 (+) 630 WP_059219814.1 TfoX/Sxy family DNA transformation protein Regulator
  PS033_RS00410 (PS033_00410) yccS 88541..90706 (-) 2166 WP_072243494.1 YccS family putative transporter -
  PS033_RS00415 (PS033_00415) - 90716..91162 (-) 447 WP_059268487.1 YccF domain-containing protein -
  PS033_RS00420 (PS033_00420) helD 91285..93339 (+) 2055 WP_059268486.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24362.39 Da        Isoelectric Point: 9.2220

>NTDB_id=786909 PS033_RS00405 WP_059219814.1 87952..88581(+) (sxy/tfoX) [Escherichia albertii strain BIA_4]
MKKLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786909 PS033_RS00405 WP_059219814.1 87952..88581(+) (sxy/tfoX) [Escherichia albertii strain BIA_4]
ATGAAAAAGCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAATGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTAGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.474

100

0.895