Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PL321_RS18735 Genome accession   NZ_CP117677
Coordinates   2650360..2650785 (+) Length   141 a.a.
NCBI ID   WP_273964701.1    Uniprot ID   -
Organism   Caloramator sp. mosi_1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2645360..2655785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL321_RS18680 (PL321_18700) - 2645425..2645914 (-) 490 Protein_3724 thioredoxin domain-containing protein -
  PL321_RS18685 (PL321_18705) - 2646003..2646143 (-) 141 WP_273962974.1 DUF4351 domain-containing protein -
  PL321_RS18690 (PL321_18710) - 2646244..2646444 (-) 201 WP_273962975.1 hypothetical protein -
  PL321_RS18695 (PL321_18715) - 2646468..2646653 (-) 186 WP_273962976.1 hypothetical protein -
  PL321_RS18700 (PL321_18720) - 2647195..2647350 (-) 156 WP_273962977.1 hypothetical protein -
  PL321_RS18705 (PL321_18725) - 2647486..2647875 (+) 390 WP_273962978.1 ABC transporter transmembrane domain-containing protein -
  PL321_RS18710 (PL321_18730) - 2647872..2647967 (+) 96 WP_273962979.1 hypothetical protein -
  PL321_RS18715 (PL321_18735) - 2647964..2648356 (+) 393 WP_273962980.1 hypothetical protein -
  PL321_RS18720 (PL321_18740) - 2648356..2648562 (+) 207 Protein_3732 ATP-binding cassette domain-containing protein -
  PL321_RS18725 (PL321_18745) - 2649000..2649974 (+) 975 WP_273962981.1 ABC transporter transmembrane domain-containing protein -
  PL321_RS18730 (PL321_18750) - 2649923..2650312 (+) 390 WP_273962982.1 ATP-binding cassette domain-containing protein -
  PL321_RS18735 (PL321_18755) rcrQ 2650360..2650785 (+) 426 WP_273964701.1 ATP-binding cassette domain-containing protein Regulator
  PL321_RS18740 (PL321_18760) - 2650894..2651136 (-) 243 WP_273962983.1 hypothetical protein -
  PL321_RS18745 (PL321_18765) - 2651190..2651729 (-) 540 WP_337961243.1 CapA family protein -
  PL321_RS18750 (PL321_18770) - 2651666..2651911 (-) 246 WP_273962984.1 hypothetical protein -
  PL321_RS20505 - 2652082..2652681 (+) 600 WP_337960886.1 AAA family ATPase -
  PL321_RS20510 - 2652878..2653012 (+) 135 WP_337961244.1 hypothetical protein -
  PL321_RS18760 (PL321_18780) - 2653208..2654134 (+) 927 WP_273962985.1 DUF58 domain-containing protein -
  PL321_RS18765 (PL321_18785) - 2654550..2655038 (+) 489 WP_273962986.1 hypothetical protein -
  PL321_RS18770 (PL321_18790) - 2655035..2655295 (+) 261 WP_273962987.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15917.24 Da        Isoelectric Point: 8.4122

>NTDB_id=786906 PL321_RS18735 WP_273964701.1 2650360..2650785(+) (rcrQ) [Caloramator sp. mosi_1]
MEAAKLANAHEFIMSLEKGYDTEVGEGGAKLSVGQRQLISIARAIVANPSIFILDEATSSVDTETEHMIQQAISKVLKGR
TSFIIAHRLSTIKSADRILVIRDGRIIEDGNHRELMKRKGYYYRLYTNQYILEQEKNIFGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=786906 PL321_RS18735 WP_273964701.1 2650360..2650785(+) (rcrQ) [Caloramator sp. mosi_1]
ATTGAGGCTGCAAAGCTTGCAAATGCTCACGAATTTATTATGTCCCTTGAAAAGGGATATGATACCGAGGTTGGTGAAGG
TGGAGCTAAGCTTTCTGTTGGACAAAGACAGCTAATCTCCATTGCAAGGGCAATTGTTGCAAACCCAAGTATTTTTATAT
TAGACGAAGCAACCTCCTCTGTGGATACAGAAACAGAGCATATGATACAGCAGGCAATTTCAAAGGTCTTAAAGGGAAGA
ACCAGCTTTATAATTGCCCACAGATTATCTACAATAAAATCCGCCGACAGGATACTTGTAATAAGGGACGGCAGGATTAT
AGAGGATGGAAATCACAGAGAGCTTATGAAAAGAAAGGGATACTACTATAGGCTTTATACAAATCAATATATACTTGAAC
AGGAAAAGAATATATTTGGGACATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(15-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.031

90.78

0.518
  rcrP Streptococcus mutans UA159

38.971

96.454

0.376
  comA/nlmT Streptococcus mutans UA159

39.844

90.78

0.362