Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   Q3Y56_RS23065 Genome accession   NZ_CP130713
Coordinates   5303253..5304287 (+) Length   344 a.a.
NCBI ID   WP_304463753.1    Uniprot ID   -
Organism   Streptomyces sp. XD-27     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5298253..5309287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y56_RS23045 (Q3Y56_23045) - 5298777..5299307 (+) 531 WP_304463751.1 cupin domain-containing protein -
  Q3Y56_RS23050 (Q3Y56_23050) - 5299620..5301224 (+) 1605 WP_304465745.1 ABC transporter substrate-binding protein -
  Q3Y56_RS23055 (Q3Y56_23055) - 5301229..5302152 (+) 924 WP_304463752.1 ABC transporter permease -
  Q3Y56_RS23060 (Q3Y56_23060) - 5302330..5303241 (+) 912 WP_304465746.1 ABC transporter permease -
  Q3Y56_RS23065 (Q3Y56_23065) amiE 5303253..5304287 (+) 1035 WP_304463753.1 ABC transporter ATP-binding protein Regulator
  Q3Y56_RS23070 (Q3Y56_23070) - 5304277..5305299 (+) 1023 Protein_4570 ABC transporter ATP-binding protein -
  Q3Y56_RS23075 (Q3Y56_23075) - 5305408..5305668 (+) 261 WP_304465747.1 type II toxin-antitoxin system VapB family antitoxin -
  Q3Y56_RS33570 - 5305687..5305779 (+) 93 Protein_4572 VapC toxin family PIN domain ribonuclease -
  Q3Y56_RS23080 (Q3Y56_23080) - 5306051..5306275 (-) 225 WP_304463754.1 DUF397 domain-containing protein -
  Q3Y56_RS23085 (Q3Y56_23085) - 5306278..5307102 (-) 825 WP_304463755.1 helix-turn-helix transcriptional regulator -
  Q3Y56_RS23090 (Q3Y56_23090) - 5307271..5307561 (+) 291 WP_304463756.1 hypothetical protein -
  Q3Y56_RS23095 (Q3Y56_23095) - 5307533..5307967 (+) 435 WP_304463757.1 hypothetical protein -
  Q3Y56_RS23100 (Q3Y56_23100) - 5308091..5308513 (+) 423 WP_304463758.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37540.26 Da        Isoelectric Point: 6.9062

>NTDB_id=786869 Q3Y56_RS23065 WP_304463753.1 5303253..5304287(+) (amiE) [Streptomyces sp. XD-27]
MTTSPESAQGRGTLLEVQDLRVEFRTRDGVAKAVNGVTYSVDAGETLAVLGESGSGKSVTAQAVMGILDSPPGSVTGGRI
LFQGRDLLRASADERRKVRGAKMAMIFQDALSALNPVMPVGAQLAEMFQVHRGLGRKESRVRAVELMDRVRMPAAKERVG
DYPHQFSGGMRQRIMIAMAMALEPDLIIADEPTTALDVTVQAQVMDLLAELQREFNMGLILITHDLGVVADVADKIAVMY
AGRIVETAPVHELYKRPAHPYTRGLLDSIPRVDQKGHDLYAIKGLPPNLMAIPPGCPFNPRCPRAQDVCRTDRPPLYPVA
EDDGTELPGRTSACHFWKDELHAR

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=786869 Q3Y56_RS23065 WP_304463753.1 5303253..5304287(+) (amiE) [Streptomyces sp. XD-27]
ATGACCACGTCTCCGGAATCCGCGCAGGGCCGGGGCACGCTGCTGGAGGTGCAGGACCTACGGGTGGAGTTCCGCACCCG
CGACGGCGTGGCGAAGGCCGTCAACGGCGTGACGTACAGCGTCGACGCGGGCGAGACCCTCGCGGTGCTGGGCGAGTCCG
GCTCCGGCAAGTCCGTGACCGCGCAGGCCGTCATGGGCATCCTGGACTCCCCGCCCGGCTCCGTCACCGGCGGCCGGATC
CTCTTCCAGGGCCGGGACCTGCTCCGCGCCTCCGCCGACGAGCGCCGCAAGGTGCGCGGCGCGAAGATGGCGATGATCTT
CCAGGACGCGCTGTCCGCCCTCAACCCGGTGATGCCGGTCGGCGCCCAGCTGGCCGAGATGTTCCAGGTGCACCGGGGCC
TGGGCCGCAAGGAGTCGCGTGTCAGGGCAGTCGAGCTGATGGACCGCGTCCGTATGCCGGCGGCGAAGGAGCGGGTGGGG
GACTATCCGCACCAGTTCTCGGGCGGTATGCGGCAGCGCATCATGATCGCCATGGCGATGGCGCTGGAGCCGGACCTGAT
CATCGCCGACGAGCCGACCACGGCCCTGGACGTGACGGTCCAGGCGCAGGTGATGGACCTCCTCGCGGAGCTCCAGCGCG
AGTTCAACATGGGCTTGATCCTGATCACCCACGACCTGGGCGTGGTGGCCGACGTCGCGGACAAGATCGCGGTGATGTAC
GCGGGCCGGATCGTGGAGACCGCCCCGGTGCACGAGCTGTACAAGCGGCCCGCGCACCCGTACACCCGCGGCCTGCTCGA
CTCCATCCCGCGCGTCGACCAGAAGGGCCATGACCTCTACGCGATCAAGGGCCTGCCGCCCAACCTCATGGCCATCCCGC
CCGGCTGCCCCTTCAACCCGCGCTGCCCGCGCGCCCAGGACGTCTGCCGTACGGACCGCCCGCCGCTCTACCCGGTGGCG
GAGGACGACGGCACGGAACTGCCCGGCCGGACCAGTGCCTGCCACTTCTGGAAGGACGAACTCCATGCGCGGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(35-193)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(245-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

45.397

91.57

0.416
  amiE Streptococcus thermophilus LMG 18311

44.904

91.279

0.41
  amiE Streptococcus thermophilus LMD-9

44.904

91.279

0.41
  oppD Streptococcus mutans UA159

44.872

90.698

0.407