Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Q3Y56_RS15495 Genome accession   NZ_CP130713
Coordinates   3640885..3642636 (-) Length   583 a.a.
NCBI ID   WP_304462515.1    Uniprot ID   -
Organism   Streptomyces sp. XD-27     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3635885..3647636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y56_RS15480 (Q3Y56_15480) - 3636630..3637463 (-) 834 WP_304462514.1 response regulator transcription factor -
  Q3Y56_RS15485 (Q3Y56_15485) - 3637778..3638647 (+) 870 WP_304465626.1 alpha/beta hydrolase -
  Q3Y56_RS15490 (Q3Y56_15490) rcrQ 3638759..3640735 (-) 1977 WP_304465627.1 ABC transporter ATP-binding protein Regulator
  Q3Y56_RS15495 (Q3Y56_15495) rcrP 3640885..3642636 (-) 1752 WP_304462515.1 ABC transporter ATP-binding protein Regulator
  Q3Y56_RS15500 (Q3Y56_15500) - 3642821..3643081 (+) 261 WP_304465628.1 MoaD/ThiS family protein -
  Q3Y56_RS15505 (Q3Y56_15505) - 3643092..3644939 (+) 1848 WP_304462516.1 hypothetical protein -
  Q3Y56_RS15510 (Q3Y56_15510) - 3645096..3645950 (+) 855 WP_369696754.1 DUF2993 domain-containing protein -
  Q3Y56_RS33530 - 3646142..3646249 (+) 108 WP_369696755.1 putative leader peptide -
  Q3Y56_RS15515 (Q3Y56_15515) - 3646390..3647229 (+) 840 WP_304462517.1 sulfurtransferase -
  Q3Y56_RS15520 (Q3Y56_15520) - 3647265..3647552 (+) 288 WP_304462518.1 DUF1416 domain-containing protein -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63171.60 Da        Isoelectric Point: 5.8033

>NTDB_id=786857 Q3Y56_RS15495 WP_304462515.1 3640885..3642636(-) (rcrP) [Streptomyces sp. XD-27]
MLVRLIRAHLGPYTRPIALIVLLQLVQTLATLYLPALNADIIDNGVVEGDTGYIVRVGGVMVAVTLLQICCAIGAVYFGA
RTAMALGRDIRAAVFDRVQSFSARELGRFGAPSLITRSTNDIQQVQMLCLMAFTIMASAPIMCVGGVLMALDQDVPLSGL
LLVIVPVLGVVIGLILRRMRPLFRGVQERIDTVNRVLREQITGIRVIRAFVRDRHERERFDKANHALMDVSLRAGRLMAL
MFPTVMLVVNIAGAAVVWFAGHRIDSGDMRIGALTAFLAYLMQILMAVMMATFMFIMVPRAEVCAERVQEVLDTETSVRP
PADPIPLPTAAESGGRRGLLELDGVEFRYPGAEEPVLRDISLIARPGETTAVIGSTGSGKSTLLGLVPRLFDPTAGSVRV
DGVDVRRLDPAELARTIGLVPQKPYLFSGTVASNLRYGRPDATDEELWRALETAQARDFVAELEEGLEAPIAQGGGNVSG
GQRQRLAIARALVGRPAIYLFDDSFSALDYATDARLRAALADETGEATVVIVAQRVATIRHADRIVVLDEGRVVGTGTHP
ELMADNATYREIVLSQLSEEEAA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=786857 Q3Y56_RS15495 WP_304462515.1 3640885..3642636(-) (rcrP) [Streptomyces sp. XD-27]
GTGCTGGTACGACTTATACGGGCACATCTGGGGCCCTACACCCGACCCATCGCGCTGATCGTGCTGCTCCAACTGGTGCA
GACGCTGGCCACGCTCTACCTTCCGGCCCTCAACGCGGACATCATCGACAACGGCGTGGTGGAGGGGGACACCGGTTACA
TCGTCCGGGTGGGCGGCGTCATGGTCGCCGTCACGCTGCTCCAGATCTGCTGCGCCATCGGCGCGGTCTATTTCGGAGCC
CGTACGGCCATGGCGCTCGGCCGCGACATCCGCGCCGCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGCTGGG
CCGCTTCGGCGCGCCCTCGCTGATCACCCGCAGCACCAACGACATCCAGCAGGTGCAGATGCTGTGCCTGATGGCCTTCA
CCATCATGGCCTCGGCGCCGATCATGTGCGTCGGCGGCGTCCTGATGGCGCTCGACCAGGACGTGCCGCTGTCCGGGCTG
CTGCTGGTCATCGTGCCGGTCCTCGGCGTCGTCATCGGGTTGATCCTGCGCCGGATGCGGCCGCTGTTCCGGGGCGTCCA
GGAGCGCATCGACACCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCATCCGCGTGATCCGCGCGTTCGTCCGCGACC
GGCATGAGCGGGAGCGGTTCGACAAGGCCAACCACGCGCTCATGGACGTGTCGCTGCGCGCCGGGCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGCTGGTGGTGAACATCGCGGGCGCCGCCGTCGTCTGGTTCGCCGGGCACCGCATCGACAGCGG
GGACATGCGGATCGGCGCGCTGACGGCGTTCCTCGCGTACCTGATGCAGATCCTGATGGCCGTCATGATGGCCACATTCA
TGTTCATCATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCGTCCAGGAGGTGCTGGACACCGAGACCAGCGTGCGGCCG
CCCGCCGACCCGATCCCGCTGCCGACCGCCGCGGAGTCCGGAGGGCGGCGCGGTCTGCTGGAGCTGGACGGCGTGGAGTT
CCGCTACCCGGGCGCCGAGGAGCCGGTGCTGCGCGACATCTCGCTGATCGCCCGGCCCGGCGAGACCACGGCCGTCATCG
GCTCCACCGGCAGCGGCAAGTCCACGCTGCTCGGCCTGGTGCCGAGGTTGTTCGACCCGACGGCGGGCAGCGTACGGGTG
GACGGGGTGGACGTGCGGCGGCTCGACCCGGCGGAGCTGGCCCGGACGATCGGACTCGTCCCGCAGAAGCCGTATCTGTT
CTCCGGCACCGTCGCCTCCAACCTGCGCTACGGCAGACCCGACGCCACCGACGAGGAGCTGTGGCGGGCGCTGGAAACCG
CCCAGGCCCGGGACTTCGTGGCGGAGTTGGAGGAGGGCCTGGAGGCGCCCATCGCGCAGGGCGGCGGCAACGTCTCCGGC
GGGCAGCGGCAGCGCCTGGCCATCGCCCGCGCGCTCGTCGGGCGCCCGGCGATCTACCTCTTCGACGACTCCTTCTCCGC
CCTGGACTACGCCACGGACGCGCGGCTGCGCGCGGCGCTGGCGGACGAGACCGGGGAGGCGACGGTCGTCATCGTCGCCC
AGCGGGTCGCCACGATCCGGCACGCCGACCGCATCGTCGTCCTGGACGAGGGCCGGGTGGTCGGTACGGGCACCCATCCC
GAACTGATGGCGGACAACGCGACGTACAGGGAGATCGTGCTGTCGCAGCTGAGCGAGGAGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(357-504)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.971

93.31

0.364