Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q3Y56_RS15490 Genome accession   NZ_CP130713
Coordinates   3638759..3640735 (-) Length   658 a.a.
NCBI ID   WP_304465627.1    Uniprot ID   -
Organism   Streptomyces sp. XD-27     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3633759..3645735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y56_RS15470 (Q3Y56_15470) - 3634436..3635449 (-) 1014 WP_304462512.1 S1C family serine protease -
  Q3Y56_RS15475 (Q3Y56_15475) - 3635583..3636605 (-) 1023 WP_304462513.1 LacI family DNA-binding transcriptional regulator -
  Q3Y56_RS15480 (Q3Y56_15480) - 3636630..3637463 (-) 834 WP_304462514.1 response regulator transcription factor -
  Q3Y56_RS15485 (Q3Y56_15485) - 3637778..3638647 (+) 870 WP_304465626.1 alpha/beta hydrolase -
  Q3Y56_RS15490 (Q3Y56_15490) rcrQ 3638759..3640735 (-) 1977 WP_304465627.1 ABC transporter ATP-binding protein Regulator
  Q3Y56_RS15495 (Q3Y56_15495) rcrP 3640885..3642636 (-) 1752 WP_304462515.1 ABC transporter ATP-binding protein Regulator
  Q3Y56_RS15500 (Q3Y56_15500) - 3642821..3643081 (+) 261 WP_304465628.1 MoaD/ThiS family protein -
  Q3Y56_RS15505 (Q3Y56_15505) - 3643092..3644939 (+) 1848 WP_304462516.1 hypothetical protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71496.18 Da        Isoelectric Point: 5.4569

>NTDB_id=786856 Q3Y56_RS15490 WP_304465627.1 3638759..3640735(-) (rcrQ) [Streptomyces sp. XD-27]
MGGQPTERSMDFRGSGRRLLGTMRPERTMLTVALGFAVLSIALTVLGPRLLGHATDLIFEGVVGRQLPADETKAEAVERL
REHGDGTVADMISAMDVVPGRGIDFDAVGTVLLWALLLYVGAAVLGLVQARIYTVVVQRAVFRMRRDVEEKLARLPLSYF
DKQPRGEVLSRATNDIDNIQQTLQQTMSQVVASLLTIVGVLAMMFWISPLLALVALLTVPLSVYVAARVGKRAQPQFVAQ
WKTTGKLNAHIEEMYTGHSLVKVFGRERESAAVFREHNEQLYASSFRAQFISGIIQPAMMFIGNLNYVLVAVVGGLRVAS
GSLSIGDVQAFVQYQRQFSQPLTQVAAMANLVQSGVASAERVFELLDAEEQSPDPEPSKDLAKDLTKNLTKDLTKDPAPS
RGLAEEPRREPVSGRVAFENVSFRYEPDKPLIEDLSLSVRPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDI
ATIPREELRSNVGMVLQDTWLFGGTIAENIAYGADGASAEAIIAAAKATHVDRFVRTLPDGYDTVLDEEGGGVSVGEKQL
ITIARAFLAEPAILVLDEATSSVDTRTEVLIQHAMASLRKGRTSFVIAHRLSTIRDADLILVMEAGRIVEQGTHEELLAA
RGAYARLYEAQFAAPVTE

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=786856 Q3Y56_RS15490 WP_304465627.1 3638759..3640735(-) (rcrQ) [Streptomyces sp. XD-27]
ATGGGCGGCCAGCCCACCGAGCGCTCCATGGACTTCCGCGGCTCCGGCCGCCGGCTGCTGGGCACCATGCGCCCCGAGCG
CACCATGCTGACGGTGGCCCTCGGCTTCGCGGTGCTCAGTATCGCGCTGACCGTGCTCGGCCCCAGGCTCCTGGGCCACG
CCACGGACCTGATCTTCGAGGGCGTGGTCGGCCGCCAACTGCCCGCGGACGAGACCAAGGCGGAGGCCGTCGAGCGGCTG
CGCGAGCACGGCGACGGCACCGTCGCGGACATGATCTCCGCGATGGACGTGGTGCCGGGCCGGGGCATCGACTTCGACGC
GGTCGGCACCGTGCTGCTGTGGGCCCTGCTGCTCTACGTGGGCGCCGCGGTCCTCGGCCTGGTCCAGGCCCGCATCTACA
CCGTCGTCGTCCAGCGGGCCGTGTTCCGGATGCGGCGCGACGTCGAGGAGAAGCTGGCCCGGCTGCCGCTGTCGTACTTC
GACAAGCAGCCGCGCGGCGAGGTGCTGTCCCGGGCGACCAACGACATCGACAACATCCAGCAGACGCTCCAGCAGACCAT
GAGCCAGGTCGTCGCCTCGCTGCTGACCATCGTGGGCGTCCTGGCGATGATGTTCTGGATCTCGCCGCTGCTGGCCCTGG
TGGCGCTGCTGACCGTGCCGCTGTCGGTGTACGTGGCGGCCCGCGTCGGCAAGCGCGCGCAGCCGCAGTTCGTCGCCCAG
TGGAAGACCACCGGCAAGCTCAACGCCCATATAGAGGAGATGTACACCGGCCACTCGCTGGTGAAGGTCTTCGGGCGGGA
GCGGGAGTCCGCGGCGGTCTTCCGGGAGCACAACGAGCAGCTGTACGCGTCGAGTTTCCGGGCGCAGTTCATCTCCGGGA
TCATCCAGCCCGCGATGATGTTCATCGGCAACCTCAACTACGTGCTGGTCGCGGTGGTCGGCGGGCTGCGGGTGGCCTCC
GGCTCGCTGTCGATCGGCGATGTGCAGGCGTTCGTCCAGTACCAGCGCCAGTTCAGCCAGCCGCTGACCCAGGTGGCCGC
GATGGCCAACCTGGTGCAGTCGGGCGTGGCGTCGGCCGAGCGGGTCTTCGAGCTGCTGGACGCGGAGGAGCAGAGCCCGG
ACCCGGAGCCGTCGAAGGACTTGGCGAAGGACCTGACGAAGAACCTGACGAAGGACCTGACGAAGGACCCGGCGCCGTCG
AGGGGCCTGGCGGAGGAGCCGCGCCGCGAACCGGTCAGCGGCCGGGTCGCGTTCGAGAACGTCTCCTTCCGCTACGAGCC
GGACAAGCCGCTGATCGAGGACCTGTCGCTGTCGGTGCGGCCGGGCCAGACGGTGGCCATCGTCGGCCCGACGGGCGCGG
GGAAGACCACCCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCAGTGGCGGCCGGATCACGCTCGACGGCGTCGACATC
GCCACGATCCCGCGCGAGGAGCTGCGCTCCAACGTCGGCATGGTCCTCCAGGACACGTGGCTGTTCGGCGGCACGATCGC
GGAGAACATCGCCTACGGGGCGGACGGGGCGTCGGCGGAGGCCATCATCGCGGCGGCGAAGGCCACCCATGTGGACCGCT
TCGTACGGACCCTCCCGGACGGCTACGACACGGTCCTGGACGAGGAGGGCGGAGGCGTCAGCGTCGGCGAGAAGCAGCTG
ATCACCATCGCGCGGGCGTTCCTGGCCGAACCGGCGATCCTCGTCCTGGACGAGGCGACCAGTTCGGTGGACACCCGCAC
GGAGGTCCTGATCCAGCACGCGATGGCGTCCCTGCGCAAGGGCCGCACCAGCTTCGTCATCGCCCACCGGCTCTCCACGA
TCCGCGACGCGGACCTGATCCTGGTGATGGAGGCGGGCCGCATCGTGGAACAGGGCACGCACGAGGAACTGCTGGCGGCA
CGGGGCGCGTACGCCCGCCTGTACGAGGCCCAGTTCGCGGCCCCGGTGACGGAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(31-342)

ABC transporter (ABC_tran)

(433-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.683

97.872

0.398