Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PS048_RS14965 Genome accession   NZ_CP117647
Coordinates   3014268..3014897 (-) Length   209 a.a.
NCBI ID   WP_000839162.1    Uniprot ID   A0A2T3RS91
Organism   Escherichia albertii strain BIA_16-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3009268..3019897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS048_RS14950 (PS048_14950) helD 3009510..3011564 (-) 2055 WP_273786557.1 DNA helicase IV -
  PS048_RS14955 (PS048_14955) - 3011687..3012133 (+) 447 WP_001261228.1 YccF domain-containing protein -
  PS048_RS14960 (PS048_14960) yccS 3012143..3014308 (+) 2166 WP_273784665.1 YccS family putative transporter -
  PS048_RS14965 (PS048_14965) sxy/tfoX 3014268..3014897 (-) 630 WP_000839162.1 TfoX/Sxy family DNA transformation protein Regulator
  PS048_RS14970 (PS048_14970) sulA 3015115..3015624 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  PS048_RS14975 (PS048_14975) ompA 3015980..3017032 (+) 1053 WP_273784667.1 porin OmpA -
  PS048_RS14980 (PS048_14980) matP 3017107..3017559 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  PS048_RS14985 (PS048_14985) - 3017745..3019505 (+) 1761 WP_273784669.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=786771 PS048_RS14965 WP_000839162.1 3014268..3014897(-) (sxy/tfoX) [Escherichia albertii strain BIA_16-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786771 PS048_RS14965 WP_000839162.1 3014268..3014897(-) (sxy/tfoX) [Escherichia albertii strain BIA_16-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGAGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACACGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

90.431

100

0.904