Detailed information NTG0786767

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Q5R38_RS05615
• Genome accession: NZ_CP130710
• Coordinates: 1151307..1152299 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DDG206
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1146307..1157299

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q5R38_RS05585 (Q5R38_05585)	ispD	1146368..1147078 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
Q5R38_RS05590 (Q5R38_05590)	ispF	1147078..1147557 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Q5R38_RS05595 (Q5R38_05595)	truD	1147554..1148603 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
Q5R38_RS05600 (Q5R38_05600)	surE	1148584..1149345 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
Q5R38_RS05605 (Q5R38_05605)	pcm	1149339..1149965 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
Q5R38_RS05610 (Q5R38_05610)	nlpD	1150150..1151244 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
Q5R38_RS05615 (Q5R38_05615)	rpoS	1151307..1152299 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
Q5R38_RS05620 (Q5R38_05620)	ygbN	1152393..1153757 (-)	1365	WP_000104441.1	GntP family transporter	-
Q5R38_RS05625 (Q5R38_05625)	ygbM	1153846..1154622 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
Q5R38_RS05630 (Q5R38_05630)	ygbL	1154627..1155265 (-)	639	WP_001278994.1	aldolase	-
Q5R38_RS05635 (Q5R38_05635)	otnK	1155262..1156524 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=786767 Q5R38_RS05615 WP_000081550.1 1151307..1152299(+) (rpoS) [Escherichia coli strain DDG206]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=786767 Q5R38_RS05615 WP_000081550.1 1151307..1152299(+) (rpoS) [Escherichia coli strain DDG206]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715