Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PS043_RS15465 Genome accession   NZ_CP117643
Coordinates   3025490..3026119 (-) Length   209 a.a.
NCBI ID   WP_000839162.1    Uniprot ID   A0A2T3RS91
Organism   Escherichia albertii strain BIA_17     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3020490..3031119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS043_RS15450 (PS043_15450) helD 3020732..3022786 (-) 2055 WP_059276944.1 DNA helicase IV -
  PS043_RS15455 (PS043_15455) - 3022909..3023355 (+) 447 WP_001261228.1 YccF domain-containing protein -
  PS043_RS15460 (PS043_15460) yccS 3023365..3025530 (+) 2166 WP_273816334.1 YccS family putative transporter -
  PS043_RS15465 (PS043_15465) sxy/tfoX 3025490..3026119 (-) 630 WP_000839162.1 TfoX/Sxy family DNA transformation protein Regulator
  PS043_RS15470 (PS043_15470) sulA 3026337..3026846 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  PS043_RS15475 (PS043_15475) ompA 3027202..3028254 (+) 1053 WP_024164823.1 porin OmpA -
  PS043_RS15480 (PS043_15480) matP 3028329..3028781 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  PS043_RS15485 (PS043_15485) - 3028967..3030727 (+) 1761 WP_059227720.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=786749 PS043_RS15465 WP_000839162.1 3025490..3026119(-) (sxy/tfoX) [Escherichia albertii strain BIA_17]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786749 PS043_RS15465 WP_000839162.1 3025490..3026119(-) (sxy/tfoX) [Escherichia albertii strain BIA_17]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGAGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

90.431

100

0.904