Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PS040_RS15175 Genome accession   NZ_CP117637
Coordinates   3053246..3053875 (-) Length   209 a.a.
NCBI ID   WP_000839162.1    Uniprot ID   A0A2T3RS91
Organism   Escherichia albertii strain BIA_18     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3048246..3058875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS040_RS15160 (PS040_15160) helD 3048488..3050542 (-) 2055 WP_273783892.1 DNA helicase IV -
  PS040_RS15165 (PS040_15165) - 3050665..3051111 (+) 447 WP_001261228.1 YccF domain-containing protein -
  PS040_RS15170 (PS040_15170) yccS 3051121..3053286 (+) 2166 WP_273782229.1 YccS family putative transporter -
  PS040_RS15175 (PS040_15175) sxy/tfoX 3053246..3053875 (-) 630 WP_000839162.1 TfoX/Sxy family DNA transformation protein Regulator
  PS040_RS15180 (PS040_15180) sulA 3054093..3054602 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  PS040_RS15185 (PS040_15185) ompA 3054958..3056010 (+) 1053 WP_024164823.1 porin OmpA -
  PS040_RS15190 (PS040_15190) matP 3056084..3056536 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  PS040_RS15195 (PS040_15195) - 3056722..3058482 (+) 1761 WP_273782230.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=786726 PS040_RS15175 WP_000839162.1 3053246..3053875(-) (sxy/tfoX) [Escherichia albertii strain BIA_18]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786726 PS040_RS15175 WP_000839162.1 3053246..3053875(-) (sxy/tfoX) [Escherichia albertii strain BIA_18]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCAGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

90.431

100

0.904