Detailed information NTG0786718

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Q5R37_RS17915
• Genome accession: NZ_CP130706
• Coordinates: 3718154..3719146 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DDG220
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3713154..3724146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q5R37_RS17895 (Q5R37_17895)	otnK	3713929..3715191 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
Q5R37_RS17900 (Q5R37_17900)	ygbL	3715188..3715826 (+)	639	WP_001278994.1	aldolase	-
Q5R37_RS17905 (Q5R37_17905)	ygbM	3715831..3716607 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
Q5R37_RS17910 (Q5R37_17910)	ygbN	3716696..3718060 (+)	1365	WP_000104441.1	GntP family transporter	-
Q5R37_RS17915 (Q5R37_17915)	rpoS	3718154..3719146 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
Q5R37_RS17920 (Q5R37_17920)	nlpD	3719209..3720303 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
Q5R37_RS17925 (Q5R37_17925)	pcm	3720488..3721114 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
Q5R37_RS17930 (Q5R37_17930)	surE	3721108..3721869 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
Q5R37_RS17935 (Q5R37_17935)	truD	3721850..3722899 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
Q5R37_RS17940 (Q5R37_17940)	ispF	3722896..3723375 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Q5R37_RS17945 (Q5R37_17945)	ispD	3723375..3724085 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=786718 Q5R37_RS17915 WP_000081550.1 3718154..3719146(-) (rpoS) [Escherichia coli strain DDG220]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=786718 Q5R37_RS17915 WP_000081550.1 3718154..3719146(-) (rpoS) [Escherichia coli strain DDG220]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715