Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PS041_RS07830 Genome accession   NZ_CP117628
Coordinates   1604470..1605099 (+) Length   209 a.a.
NCBI ID   WP_000839162.1    Uniprot ID   A0A2T3RS91
Organism   Escherichia albertii strain BIA_22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1599470..1610099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS041_RS07810 (PS041_07810) - 1599862..1601622 (-) 1761 WP_059217576.1 AAA family ATPase -
  PS041_RS07815 (PS041_07815) matP 1601808..1602260 (+) 453 WP_000877164.1 macrodomain Ter protein MatP -
  PS041_RS07820 (PS041_07820) ompA 1602335..1603387 (-) 1053 WP_024164823.1 porin OmpA -
  PS041_RS07825 (PS041_07825) sulA 1603743..1604252 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  PS041_RS07830 (PS041_07830) sxy/tfoX 1604470..1605099 (+) 630 WP_000839162.1 TfoX/Sxy family DNA transformation protein Regulator
  PS041_RS07835 (PS041_07835) yccS 1605059..1607224 (-) 2166 WP_000875014.1 YccS family putative transporter -
  PS041_RS07840 (PS041_07840) - 1607234..1607680 (-) 447 WP_001261228.1 YccF domain-containing protein -
  PS041_RS07845 (PS041_07845) helD 1607803..1609857 (+) 2055 WP_273825521.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=786695 PS041_RS07830 WP_000839162.1 1604470..1605099(+) (sxy/tfoX) [Escherichia albertii strain BIA_22]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786695 PS041_RS07830 WP_000839162.1 1604470..1605099(+) (sxy/tfoX) [Escherichia albertii strain BIA_22]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCATCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGAACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCAGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

90.431

100

0.904