Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Q5R37_RS08535 Genome accession   NZ_CP130706
Coordinates   1802124..1802753 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain DDG220     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797124..1807753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R37_RS08515 (Q5R37_08515) ycbZ 1797525..1799285 (-) 1761 WP_000152888.1 Lon protease family protein -
  Q5R37_RS08520 (Q5R37_08520) matP 1799471..1799923 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  Q5R37_RS08525 (Q5R37_08525) ompA 1799999..1801039 (-) 1041 WP_000750416.1 porin OmpA -
  Q5R37_RS08530 (Q5R37_08530) sulA 1801396..1801905 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  Q5R37_RS08535 (Q5R37_08535) sxy/tfoX 1802124..1802753 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  Q5R37_RS08540 (Q5R37_08540) yccS 1802716..1804878 (-) 2163 WP_000875058.1 YccS family putative transporter -
  Q5R37_RS08545 (Q5R37_08545) yccF 1804888..1805334 (-) 447 WP_001261235.1 YccF domain-containing protein -
  Q5R37_RS08550 (Q5R37_08550) helD 1805457..1807511 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=786692 Q5R37_RS08535 WP_000839153.1 1802124..1802753(+) (sxy/tfoX) [Escherichia coli strain DDG220]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786692 Q5R37_RS08535 WP_000839153.1 1802124..1802753(+) (sxy/tfoX) [Escherichia coli strain DDG220]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1