Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PS039_RS07555 Genome accession   NZ_CP117620
Coordinates   1608044..1608673 (+) Length   209 a.a.
NCBI ID   WP_273810417.1    Uniprot ID   -
Organism   Escherichia albertii strain BIA_24     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603044..1613673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS039_RS07535 (PS039_07535) - 1603436..1605196 (-) 1761 WP_000156442.1 AAA family ATPase -
  PS039_RS07540 (PS039_07540) matP 1605382..1605834 (+) 453 WP_000877164.1 macrodomain Ter protein MatP -
  PS039_RS07545 (PS039_07545) ompA 1605909..1606961 (-) 1053 WP_024164823.1 porin OmpA -
  PS039_RS07550 (PS039_07550) sulA 1607317..1607826 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  PS039_RS07555 (PS039_07555) sxy/tfoX 1608044..1608673 (+) 630 WP_273810417.1 TfoX/Sxy family DNA transformation protein Regulator
  PS039_RS07560 (PS039_07560) yccS 1608633..1610798 (-) 2166 WP_072243810.1 YccS family putative transporter -
  PS039_RS07565 (PS039_07565) - 1610808..1611254 (-) 447 WP_001261228.1 YccF domain-containing protein -
  PS039_RS07570 (PS039_07570) helD 1611377..1613431 (+) 2055 WP_273810569.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24317.29 Da        Isoelectric Point: 9.0264

>NTDB_id=786672 PS039_RS07555 WP_273810417.1 1608044..1608673(+) (sxy/tfoX) [Escherichia albertii strain BIA_24]
MKILSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786672 PS039_RS07555 WP_273810417.1 1608044..1608673(+) (sxy/tfoX) [Escherichia albertii strain BIA_24]
ATGAAAATCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCATCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGTGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCGCG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.952

100

0.9