Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PS046_RS14760 Genome accession   NZ_CP117615
Coordinates   2981730..2982359 (-) Length   209 a.a.
NCBI ID   WP_059219814.1    Uniprot ID   -
Organism   Escherichia albertii strain BIA_25     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2976730..2987359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS046_RS14745 (PS046_14745) helD 2976972..2979026 (-) 2055 WP_059268486.1 DNA helicase IV -
  PS046_RS14750 (PS046_14750) - 2979149..2979595 (+) 447 WP_001261228.1 YccF domain-containing protein -
  PS046_RS14755 (PS046_14755) yccS 2979605..2981770 (+) 2166 WP_072248637.1 YccS family putative transporter -
  PS046_RS14760 (PS046_14760) sxy/tfoX 2981730..2982359 (-) 630 WP_059219814.1 TfoX/Sxy family DNA transformation protein Regulator
  PS046_RS14765 (PS046_14765) sulA 2982577..2983086 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  PS046_RS14770 (PS046_14770) ompA 2983442..2984494 (+) 1053 WP_024164823.1 porin OmpA -
  PS046_RS14775 (PS046_14775) matP 2984569..2985021 (-) 453 WP_059219816.1 macrodomain Ter protein MatP -
  PS046_RS14780 (PS046_14780) - 2985207..2986967 (+) 1761 WP_273812026.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24362.39 Da        Isoelectric Point: 9.2220

>NTDB_id=786659 PS046_RS14760 WP_059219814.1 2981730..2982359(-) (sxy/tfoX) [Escherichia albertii strain BIA_25]
MKKLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786659 PS046_RS14760 WP_059219814.1 2981730..2982359(-) (sxy/tfoX) [Escherichia albertii strain BIA_25]
ATGAAAAAGCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAATGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTAGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.474

100

0.895