Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   Q5R05_RS08950 Genome accession   NZ_CP130703
Coordinates   1747248..1749065 (-) Length   605 a.a.
NCBI ID   WP_014974993.1    Uniprot ID   K0DBY3
Organism   Leuconostoc carnosum strain AMS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1742248..1754065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS08910 (Q5R05_08910) argB 1742658..1743395 (+) 738 WP_135197927.1 acetylglutamate kinase -
  Q5R05_RS08915 (Q5R05_08915) - 1743420..1744541 (+) 1122 WP_135197888.1 acetylornithine/succinylornithine family transaminase -
  Q5R05_RS08925 (Q5R05_08925) - 1744796..1745083 (+) 288 WP_014974989.1 hypothetical protein -
  Q5R05_RS08930 (Q5R05_08930) - 1745124..1745498 (+) 375 WP_135197889.1 TIGR02328 family protein -
  Q5R05_RS08935 (Q5R05_08935) - 1745701..1745940 (+) 240 WP_135197890.1 hypothetical protein -
  Q5R05_RS08940 (Q5R05_08940) - 1745967..1746734 (-) 768 WP_135197928.1 helix-turn-helix transcriptional regulator -
  Q5R05_RS08950 (Q5R05_08950) recQ 1747248..1749065 (-) 1818 WP_014974993.1 DNA helicase RecQ Machinery gene
  Q5R05_RS08955 (Q5R05_08955) - 1749161..1749817 (-) 657 WP_135198210.1 histidine phosphatase family protein -
  Q5R05_RS08960 (Q5R05_08960) - 1749985..1750809 (-) 825 WP_135197892.1 LysR family transcriptional regulator -
  Q5R05_RS08965 (Q5R05_08965) - 1750952..1751950 (+) 999 WP_014974996.1 YeiH family protein -
  Q5R05_RS08970 (Q5R05_08970) - 1752047..1752385 (+) 339 WP_019040374.1 hypothetical protein -
  Q5R05_RS08975 (Q5R05_08975) - 1752415..1753770 (-) 1356 WP_135197893.1 Na+/H+ antiporter NhaC family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68181.40 Da        Isoelectric Point: 6.2467

>NTDB_id=786657 Q5R05_RS08950 WP_014974993.1 1747248..1749065(-) (recQ) [Leuconostoc carnosum strain AMS1]
MQTPREILKEVFGYDDFRAGQLDIIEKVLAHKHTLAIMPTGGGKSITYQLPALMFEGLTLVISPLISLMKDQVDGLNTMG
IDATFLNSTLTGQEQAQRMSDIRAGLYKMLYVSPERLEIPSFFGFIQQLPIDLVAIDEAHVMSQWGHDFRPSYLNILPLL
HEIPGSPAVLGLTATATERVRESLQQLLDVSDEDTVLTGFARDNLALKIMHYVDKRRYVQDYLRENSEQSGIIYAATRKQ
VDELYEFLHKKGVKVGRYHAGLPEHERQAMQEAFLYDDVQVIVATNAFGMGINKPNVRFVIHYSVPGNIEAYYQEIGRAG
RDGLPAEAVLLYAPQDMHLQEFFVQKSGGSEEYKQNEYNKIREMNAFANTQTCLPRYLLGYFGEIVDQDCKMCSNCLDSR
EMVDVTTDTQKVLANVMRMNQSFGKTMVAKILKGSHDATVKKYDYLTQLPTYGLMKAHTLKDLTAFIDFLTADGYLKTAG
GEFPVLKVTEIGARVLKGQLVVEKRLNRSVVAQQKVVTSAAKGLKLSDDDNQLFARLKAKRLELAREAGIPPFLIFSDKT
LMNMAILRPKTDEEFLALSGVGEKKFEIYHNDFAHVLADDLQVRE

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=786657 Q5R05_RS08950 WP_014974993.1 1747248..1749065(-) (recQ) [Leuconostoc carnosum strain AMS1]
ATGCAAACACCGCGTGAGATTTTAAAAGAAGTATTTGGGTACGATGATTTTCGTGCAGGACAATTAGATATTATTGAAAA
AGTGTTAGCCCATAAACATACATTGGCAATTATGCCAACTGGTGGTGGTAAATCGATCACGTATCAATTACCAGCACTGA
TGTTTGAGGGGTTGACTTTAGTTATTTCACCATTAATTTCTTTGATGAAAGACCAGGTTGATGGTCTTAATACGATGGGG
ATTGATGCAACTTTTCTCAATTCTACATTAACAGGACAAGAGCAGGCGCAGCGCATGTCAGATATTCGTGCGGGTCTCTA
TAAAATGTTGTATGTATCACCAGAGCGCTTGGAAATTCCAAGTTTTTTTGGTTTTATTCAACAGTTGCCAATTGATTTAG
TTGCGATTGATGAAGCGCACGTCATGTCACAATGGGGGCATGATTTTCGACCTAGTTATTTAAATATTTTACCATTATTA
CATGAAATTCCTGGTTCTCCAGCTGTTTTAGGATTAACTGCAACAGCTACTGAACGTGTTCGTGAGAGCTTGCAGCAGTT
ACTTGATGTCTCTGACGAAGATACTGTGCTGACAGGTTTTGCTCGTGATAATCTTGCGCTTAAAATCATGCATTATGTTG
ACAAACGACGTTACGTGCAAGATTATTTACGTGAAAATAGTGAGCAAAGTGGTATTATTTATGCGGCTACACGTAAACAA
GTTGATGAATTATATGAATTTTTACATAAAAAAGGGGTTAAAGTTGGTCGTTATCATGCAGGGTTACCTGAACATGAACG
GCAAGCCATGCAGGAAGCATTCTTATATGATGATGTGCAGGTAATCGTCGCAACCAATGCTTTTGGTATGGGCATTAATA
AGCCCAATGTGCGCTTTGTTATCCATTACTCTGTACCAGGAAATATCGAAGCCTATTATCAAGAAATTGGGCGCGCTGGA
CGTGATGGCTTGCCTGCTGAAGCTGTACTATTATATGCACCACAAGATATGCATTTACAAGAATTTTTTGTACAAAAATC
TGGTGGTTCAGAAGAATATAAGCAAAATGAATATAATAAAATCCGAGAAATGAACGCATTTGCTAATACGCAAACTTGTT
TACCACGCTATTTATTAGGATATTTTGGTGAAATCGTTGACCAAGATTGCAAGATGTGTTCGAACTGCTTAGATTCTCGC
GAGATGGTTGATGTGACGACAGATACCCAAAAGGTCCTGGCCAATGTGATGCGTATGAATCAGAGCTTTGGTAAAACAAT
GGTTGCCAAAATATTAAAGGGTTCACATGATGCCACTGTGAAAAAGTATGATTATTTGACCCAATTACCCACATATGGCT
TGATGAAAGCACATACATTGAAAGATTTAACGGCTTTTATTGATTTTCTAACGGCTGATGGTTACTTGAAAACAGCGGGT
GGCGAGTTCCCAGTGCTTAAGGTGACAGAAATCGGTGCTCGTGTGCTTAAAGGACAATTGGTTGTGGAAAAACGACTGAA
TCGTTCTGTGGTGGCACAGCAAAAAGTAGTTACGTCTGCTGCCAAAGGGTTGAAATTATCTGATGATGATAATCAATTAT
TTGCTCGGTTGAAGGCAAAAAGGCTGGAATTGGCTCGAGAGGCAGGTATTCCACCGTTTCTTATTTTTTCGGATAAGACT
TTGATGAATATGGCAATTCTCAGGCCAAAAACAGATGAAGAATTTTTGGCACTTTCTGGTGTTGGTGAAAAGAAGTTTGA
AATCTATCATAACGACTTTGCTCATGTGCTTGCAGATGACTTACAAGTACGAGAATAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-322)

HRDC domain (HRDC)

(531-594)

DEAD/DEAH box helicase (DEAD)

(20-181)

RQC domain (RQC)

(400-505)

RecQ zinc-binding (RecQ_Zn_bind)

(334-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DBY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

45.763

97.521

0.446