Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   Q5R05_RS07935 Genome accession   NZ_CP130703
Coordinates   1560220..1560501 (-) Length   93 a.a.
NCBI ID   WP_150280124.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain AMS1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555220..1565501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS07905 (Q5R05_07905) - 1556532..1557788 (-) 1257 WP_135197789.1 acetate/propionate family kinase -
  Q5R05_RS07910 (Q5R05_07910) - 1557915..1558928 (-) 1014 WP_135197790.1 class I SAM-dependent methyltransferase -
  Q5R05_RS07915 (Q5R05_07915) - 1558960..1559256 (-) 297 WP_019040211.1 hypothetical protein -
  Q5R05_RS07920 (Q5R05_07920) - 1559257..1559673 (-) 417 WP_172600984.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q5R05_RS07925 (Q5R05_07925) - 1559657..1559830 (-) 174 WP_184284961.1 hypothetical protein -
  Q5R05_RS07930 (Q5R05_07930) - 1559844..1560236 (-) 393 WP_135197793.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q5R05_RS07935 (Q5R05_07935) comGC 1560220..1560501 (-) 282 WP_150280124.1 competence protein ComGC Machinery gene
  Q5R05_RS07940 (Q5R05_07940) - 1560592..1560897 (-) 306 WP_135198272.1 phage holin family protein -
  Q5R05_RS07945 (Q5R05_07945) - 1560906..1561997 (-) 1092 WP_305068432.1 GH25 family lysozyme -
  Q5R05_RS07950 (Q5R05_07950) - 1562001..1562225 (-) 225 WP_150281000.1 hypothetical protein -
  Q5R05_RS07955 (Q5R05_07955) - 1562229..1562375 (-) 147 WP_190323696.1 hypothetical protein -
  Q5R05_RS07960 (Q5R05_07960) - 1562375..1562614 (-) 240 WP_305068433.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10623.26 Da        Isoelectric Point: 6.6397

>NTDB_id=786648 Q5R05_RS07935 WP_150280124.1 1560220..1560501(-) (comGC) [Leuconostoc carnosum strain AMS1]
MYLIEAAIVLFIISLLMLLILPNLNNQRKKAVDTHATAMVSTVQTQIDLYENEHPQNHNVTMDNLVHDGYLTNKQVQKVK
DLNITITNNEAHK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=786648 Q5R05_RS07935 WP_150280124.1 1560220..1560501(-) (comGC) [Leuconostoc carnosum strain AMS1]
ATATACTTAATTGAAGCAGCTATTGTACTATTTATCATTAGTTTACTAATGCTACTGATTTTACCCAATCTTAACAATCA
ACGTAAAAAAGCTGTTGATACACATGCAACTGCGATGGTATCAACAGTTCAGACACAAATTGATCTATATGAGAATGAAC
ATCCACAAAATCATAATGTAACGATGGATAATTTAGTACATGATGGTTATTTAACCAATAAGCAGGTACAAAAAGTTAAA
GATTTAAATATTACAATTACCAATAATGAAGCACACAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

38.636

94.624

0.366