Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | PS038_RS13585 | Genome accession | NZ_CP117609 |
| Coordinates | 2819408..2820037 (-) | Length | 209 a.a. |
| NCBI ID | WP_059218545.1 | Uniprot ID | - |
| Organism | Escherichia albertii strain BIA_26 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2794341..2826588 | 2819408..2820037 | within | 0 |
Gene organization within MGE regions
Location: 2794341..2826588
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS038_RS13435 (PS038_13435) | - | 2795197..2795475 (-) | 279 | WP_273818290.1 | hypothetical protein | - |
| PS038_RS13440 (PS038_13440) | - | 2795578..2796681 (-) | 1104 | WP_000401169.1 | helix-turn-helix domain-containing protein | - |
| PS038_RS13445 (PS038_13445) | - | 2796662..2797312 (-) | 651 | WP_001004961.1 | hypothetical protein | - |
| PS038_RS13450 (PS038_13450) | hokD | 2797478..2797633 (-) | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| PS038_RS13455 (PS038_13455) | - | 2797705..2798778 (+) | 1074 | WP_001178384.1 | IS481 family transposase | - |
| PS038_RS24520 | - | 2798994..2799077 (-) | 84 | Protein_2640 | hypothetical protein | - |
| PS038_RS13460 (PS038_13460) | - | 2799337..2800110 (+) | 774 | WP_000160655.1 | alpha/beta hydrolase | - |
| PS038_RS13465 (PS038_13465) | - | 2800462..2800875 (-) | 414 | WP_001151233.1 | DUF977 family protein | - |
| PS038_RS13470 (PS038_13470) | - | 2800916..2801986 (-) | 1071 | WP_273818114.1 | phage replisome organizer | - |
| PS038_RS13475 (PS038_13475) | - | 2802058..2802483 (-) | 426 | WP_059215642.1 | toxin YdaT family protein | - |
| PS038_RS13480 (PS038_13480) | - | 2802467..2802748 (-) | 282 | WP_000391948.1 | transcriptional regulator | - |
| PS038_RS13485 (PS038_13485) | - | 2802849..2803268 (+) | 420 | WP_087891676.1 | hypothetical protein | - |
| PS038_RS13490 (PS038_13490) | - | 2803533..2803685 (+) | 153 | WP_273818115.1 | DUF1391 family protein | - |
| PS038_RS13495 (PS038_13495) | - | 2803697..2804335 (+) | 639 | WP_059222115.1 | hypothetical protein | - |
| PS038_RS13500 (PS038_13500) | - | 2804336..2804545 (-) | 210 | WP_273818116.1 | hypothetical protein | - |
| PS038_RS13505 (PS038_13505) | dicB | 2805113..2805301 (+) | 189 | WP_273818118.1 | cell division inhibition protein DicB | - |
| PS038_RS13510 (PS038_13510) | - | 2805298..2805489 (+) | 192 | WP_001090222.1 | DUF1482 family protein | - |
| PS038_RS13515 (PS038_13515) | - | 2805583..2808042 (+) | 2460 | WP_273818119.1 | exonuclease | - |
| PS038_RS13520 (PS038_13520) | - | 2808109..2808360 (+) | 252 | WP_273818120.1 | DUF4224 domain-containing protein | - |
| PS038_RS13525 (PS038_13525) | - | 2808329..2809348 (+) | 1020 | WP_273818121.1 | tyrosine-type recombinase/integrase | - |
| PS038_RS13530 (PS038_13530) | yccA | 2809757..2810416 (+) | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| PS038_RS13535 (PS038_13535) | tusE | 2810508..2810837 (+) | 330 | WP_024164819.1 | sulfurtransferase TusE | - |
| PS038_RS13540 (PS038_13540) | yccX | 2810834..2811112 (-) | 279 | WP_000048219.1 | acylphosphatase | - |
| PS038_RS13545 (PS038_13545) | rlmI | 2811206..2812396 (+) | 1191 | WP_000116313.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| PS038_RS13550 (PS038_13550) | hspQ | 2812454..2812771 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| PS038_RS13555 (PS038_13555) | - | 2812816..2813229 (-) | 414 | WP_002462360.1 | CoA-binding protein | - |
| PS038_RS13560 (PS038_13560) | - | 2813402..2814064 (+) | 663 | WP_000847777.1 | DUF2057 family protein | - |
| PS038_RS13565 (PS038_13565) | mgsA | 2814160..2814618 (+) | 459 | WP_000424182.1 | methylglyoxal synthase | - |
| PS038_RS13570 (PS038_13570) | helD | 2814650..2816704 (-) | 2055 | WP_025237257.1 | DNA helicase IV | - |
| PS038_RS13575 (PS038_13575) | - | 2816827..2817273 (+) | 447 | WP_001261228.1 | YccF domain-containing protein | - |
| PS038_RS13580 (PS038_13580) | yccS | 2817283..2819445 (+) | 2163 | WP_072248756.1 | YccS family putative transporter | - |
| PS038_RS13585 (PS038_13585) | sxy/tfoX | 2819408..2820037 (-) | 630 | WP_059218545.1 | TfoX/Sxy family DNA transformation protein | Regulator |
| PS038_RS13590 (PS038_13590) | sulA | 2820255..2820764 (+) | 510 | WP_000288703.1 | SOS-induced cell division inhibitor SulA | - |
| PS038_RS13595 (PS038_13595) | ompA | 2821120..2822172 (+) | 1053 | WP_024164823.1 | porin OmpA | - |
| PS038_RS13600 (PS038_13600) | matP | 2822247..2822699 (-) | 453 | WP_273818122.1 | macrodomain Ter protein MatP | - |
| PS038_RS13605 (PS038_13605) | - | 2822885..2824645 (+) | 1761 | WP_059218546.1 | AAA family ATPase | - |
| PS038_RS13610 (PS038_13610) | fabA | 2824714..2825232 (+) | 519 | WP_002462364.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| PS038_RS13615 (PS038_13615) | rmf | 2825301..2825468 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| PS038_RS13620 (PS038_13620) | pqiC | 2825725..2826288 (-) | 564 | WP_000759093.1 | membrane integrity-associated transporter subunit PqiC | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24323.27 Da Isoelectric Point: 9.0264
>NTDB_id=786637 PS038_RS13585 WP_059218545.1 2819408..2820037(-) (sxy/tfoX) [Escherichia albertii strain BIA_26]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIMPKPEFPTEPE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIMPKPEFPTEPE
Nucleotide
Download Length: 630 bp
>NTDB_id=786637 PS038_RS13585 WP_059218545.1 2819408..2820037(-) (sxy/tfoX) [Escherichia albertii strain BIA_26]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTTTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCATCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTATGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTTTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCATCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTATGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
90.431 |
100 |
0.904 |