Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   Q5R05_RS03280 Genome accession   NZ_CP130703
Coordinates   612054..614018 (+) Length   654 a.a.
NCBI ID   WP_014974075.1    Uniprot ID   K0DD30
Organism   Leuconostoc carnosum strain AMS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 607054..619018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS03255 (Q5R05_03255) - 607241..608026 (+) 786 WP_172601004.1 hypothetical protein -
  Q5R05_RS03260 (Q5R05_03260) - 608201..609274 (+) 1074 WP_223822759.1 AAA family ATPase -
  Q5R05_RS03265 (Q5R05_03265) - 609370..610323 (+) 954 WP_041773144.1 2-dehydropantoate 2-reductase -
  Q5R05_RS03270 (Q5R05_03270) msrA 610377..610904 (+) 528 WP_014974073.1 peptide-methionine (S)-S-oxide reductase MsrA -
  Q5R05_RS03275 (Q5R05_03275) rnz 611077..612042 (+) 966 WP_014974074.1 ribonuclease Z -
  Q5R05_RS03280 (Q5R05_03280) recJ 612054..614018 (+) 1965 WP_014974075.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  Q5R05_RS03285 (Q5R05_03285) - 614136..614666 (+) 531 WP_014974076.1 adenine phosphoribosyltransferase -
  Q5R05_RS03290 (Q5R05_03290) - 614766..615464 (-) 699 WP_014974077.1 SAM-dependent methyltransferase -
  Q5R05_RS03295 (Q5R05_03295) - 615454..616026 (-) 573 WP_014974078.1 DsbA family protein -
  Q5R05_RS03300 (Q5R05_03300) - 616304..616882 (+) 579 WP_014974079.1 GTP pyrophosphokinase family protein -
  Q5R05_RS03305 (Q5R05_03305) - 616879..617676 (+) 798 WP_014974080.1 NAD kinase -
  Q5R05_RS03310 (Q5R05_03310) - 617733..618635 (+) 903 WP_014974081.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 71982.18 Da        Isoelectric Point: 4.9619

>NTDB_id=786624 Q5R05_RS03280 WP_014974075.1 612054..614018(+) (recJ) [Leuconostoc carnosum strain AMS1]
MSQKNWHILPQPSEKSVKQLTTQLNIDHLTATIVAQKGYTTPETAFQYLQPSIEQLHDPMALHDMDKAFERLTEAAFGGE
KIVVYGDYDLDGVTSTAVMVEALEVLGADVTAYIPNRFTDGYGPNIDVYKRLIADGAQVIVTVDNGMSGHEAVAYAMSQG
VDVIITDHHEMAPTLPEAYAVIHPRHPEGHYPFHDLSGVGMAFKVAQALLTDGQAISDRSDLPTEMLDLVALGEIADMVS
LTDENRTLVSWGLKQLSTSPRPGLSALLKNAGQAANEPIISETVSFKIAPRLNAVGRLGDAKLALDLLLSQDPDEAAELA
SQIEAINAQRQEIVEEVFGAAKQMALSEAHQNDEVLIISGIDWHQGVLGIVASRLVELLHKPAIVLSLVVGNYKGSGRSY
GDFDLYALMSQYRDLYDTFGGHANALGLSISEDNLVILRLRIATLSALNIREKPVTINLTLPASDMTTSLYDGLTLLEPF
GTDNPQPVFEVKQAPITKVITMGKSKQHIKLTLNNQVDAVGFNHPDWAASMLNQKSMSFVATMGLNYFRGKKQLQLLLTD
VDLPVIVENDAHKQFFSQVYKFIYTHQDLNFAQNLDKIAKQLYINKTDLNIMVQVFIELGFVQVINSGFVKIIPNAPQRD
LTESTTYQKFLAKR

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=786624 Q5R05_RS03280 WP_014974075.1 612054..614018(+) (recJ) [Leuconostoc carnosum strain AMS1]
ATGAGTCAAAAAAATTGGCATATACTACCACAACCATCTGAAAAATCCGTTAAGCAACTGACAACACAATTAAATATTGA
TCATTTAACTGCGACGATTGTCGCACAAAAAGGTTACACAACACCAGAGACGGCGTTTCAGTATTTACAACCAAGTATTG
AACAGCTTCATGATCCTATGGCACTACATGACATGGATAAAGCTTTTGAACGCTTAACTGAGGCAGCATTTGGTGGTGAA
AAGATTGTTGTTTATGGTGATTATGATTTAGATGGGGTCACAAGCACAGCAGTTATGGTGGAAGCGCTTGAAGTATTAGG
CGCCGATGTCACAGCTTATATTCCCAATCGCTTCACTGACGGTTATGGCCCCAACATTGATGTTTATAAGCGGTTGATTG
CTGACGGTGCGCAAGTGATTGTGACAGTCGACAATGGTATGAGCGGGCATGAAGCCGTTGCTTATGCCATGAGTCAGGGT
GTTGATGTGATTATTACTGATCATCATGAAATGGCACCTACATTACCTGAAGCTTACGCAGTAATACATCCAAGGCACCC
CGAAGGTCACTATCCATTTCATGATTTATCAGGTGTAGGCATGGCCTTCAAGGTCGCACAAGCTTTACTGACGGATGGGC
AGGCGATTAGTGATCGTTCCGATCTACCAACGGAAATGCTTGATTTAGTAGCTTTAGGTGAAATTGCCGATATGGTTTCA
TTAACTGATGAAAATCGGACACTTGTTTCCTGGGGATTAAAGCAACTAAGTACCAGTCCACGACCAGGATTATCTGCATT
GCTCAAAAATGCTGGTCAAGCAGCCAATGAACCTATTATTTCAGAAACTGTTTCCTTTAAAATCGCGCCACGCTTAAATG
CTGTGGGACGTTTAGGGGATGCTAAATTAGCCCTTGATTTACTTTTGAGTCAAGATCCTGATGAAGCAGCGGAATTGGCA
TCACAAATTGAAGCTATTAATGCGCAACGTCAAGAAATTGTGGAAGAAGTATTTGGTGCGGCTAAACAAATGGCTTTATC
TGAAGCACACCAAAACGACGAGGTTTTGATTATATCAGGGATTGATTGGCATCAAGGTGTTTTAGGTATTGTTGCCAGTC
GGTTAGTTGAATTATTACACAAGCCAGCCATTGTTTTAAGTTTGGTTGTTGGTAATTATAAAGGGTCTGGTCGTAGTTAT
GGTGATTTTGATCTTTATGCATTGATGAGTCAGTATCGTGACTTATATGATACCTTTGGTGGGCATGCGAATGCTTTGGG
ATTATCGATTTCAGAAGATAATTTAGTGATATTGCGTCTGCGAATCGCTACATTATCAGCACTTAACATTCGAGAAAAGC
CTGTGACAATTAATTTGACACTACCCGCAAGTGATATGACAACATCGCTTTATGATGGTTTAACACTCTTGGAGCCATTT
GGAACCGATAACCCACAGCCGGTTTTTGAGGTTAAGCAAGCACCAATTACCAAGGTGATCACAATGGGGAAATCTAAACA
GCATATTAAGCTGACGTTGAACAACCAAGTGGACGCTGTAGGCTTTAACCATCCTGACTGGGCTGCGAGCATGCTGAATC
AAAAAAGCATGTCCTTTGTTGCGACGATGGGGTTGAACTATTTTCGTGGCAAGAAACAGCTACAATTACTATTAACGGAT
GTTGATTTGCCAGTAATTGTTGAAAATGATGCACATAAACAATTTTTTTCGCAAGTATACAAGTTTATTTACACACACCA
AGACTTGAATTTTGCGCAAAACTTGGATAAAATAGCAAAGCAACTATATATCAACAAAACTGACCTCAATATTATGGTGC
AAGTCTTTATCGAACTTGGTTTTGTGCAAGTGATTAATAGTGGGTTTGTCAAAATTATTCCTAACGCACCACAAAGAGAC
TTAACAGAGTCAACGACTTATCAAAAGTTTTTGGCGAAACGTTAA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(573-653)

DHHA1 domain (DHHA1)

(324-435)

RecJ OB domain (RecJ_OB)

(457-560)

DHH family (DHH)

(81-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

37.983

100

0.42