Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   Q5R05_RS00730 Genome accession   NZ_CP130703
Coordinates   137719..140082 (+) Length   787 a.a.
NCBI ID   WP_014973668.1    Uniprot ID   K0D895
Organism   Leuconostoc carnosum strain AMS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 132719..145082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS00705 (Q5R05_00705) phnE 132977..133786 (+) 810 WP_014973664.1 phosphonate ABC transporter, permease protein PhnE -
  Q5R05_RS00710 (Q5R05_00710) - 133830..135335 (+) 1506 WP_014973665.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  Q5R05_RS00715 (Q5R05_00715) - 135486..136118 (+) 633 WP_305068466.1 LysM domain-containing protein -
  Q5R05_RS00720 (Q5R05_00720) - 136198..137442 (+) 1245 WP_041773121.1 NADH-dependent flavin oxidoreductase -
  Q5R05_RS00730 (Q5R05_00730) helD 137719..140082 (+) 2364 WP_014973668.1 RNA polymerase recycling motor HelD Machinery gene
  Q5R05_RS00735 (Q5R05_00735) - 140082..140759 (+) 678 WP_014973669.1 type I pantothenate kinase -
  Q5R05_RS00740 (Q5R05_00740) - 140856..142358 (+) 1503 WP_014973670.1 MDR family MFS transporter -
  Q5R05_RS00745 (Q5R05_00745) - 142360..143037 (+) 678 WP_014973671.1 DUF4811 domain-containing protein -
  Q5R05_RS00750 (Q5R05_00750) - 143152..144603 (+) 1452 WP_014973672.1 glycosyltransferase -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 90325.97 Da        Isoelectric Point: 5.6313

>NTDB_id=786605 Q5R05_RS00730 WP_014973668.1 137719..140082(+) (helD) [Leuconostoc carnosum strain AMS1]
MDNQTKIEETQYLEKTLTEMKTSLKSTETEIKRTNKNINTVSQSWGEVRLKTDTYSGIVETAASIRQQQQMLSERENSKT
RAEQRFATLTKQIDKPYFARIDFNESVSDSGEAETIYIGLGSFSDDKNKFLVYDWRAPVASIYYDGGIGQVTYLTPDGTQ
QANVMLKRQFQIEDGVIVTLFDTEEAIGDAMLMNALSGESSTKMKSIVTTIQKEQNKIIRNTRADLLFVQGAAGSGKTAA
VLQRIAYLLYRYRGKLTSGQVVLFSPNQLFNDYIDNVLPELGEQNMVQMTFYQYASRRLPKINVETLQERFENDMTDDKI
SLVKGSLAMFHALSTYADHLNRSDMRIRHLMFRGEPLVNKERITEIYYQYNENYKLGQRLEATRETLLRSLNAHINSEMR
KEWVELAIENLSKQEYDELVGAGKVRIGDDQEQDAASRTRQTQLGSGPKEREFASEKSERHFLAKQIVTQSLRPLARQIR
RGSFLNINAQFVDFLRHVHEYVDLSQFGIVDNDWHNHVEQVIDSLKAKRLSLADTTMYLYLYDLITGKHGERDIRFLFID
EIQDYTPFQLAFLKFSFPLAKFTVLGDLNQAIFTKDNAQNLQTDFATLFDTDRVEQAKLTQTYRSTQQITDFTKYILRDG
QDITAFNREGEKPNICVADSQPKMMTQLRQQILQNKQDSESTAIITKTLADAQELMAELGDKSVTLIQSENQRLAQGAIV
VPSYLAKGLEFDAVIIWHADDTRYGDDSQRRLLYTVASRAMHRLTLLSQGEMTTLIDDVPQHLYEVK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=786605 Q5R05_RS00730 WP_014973668.1 137719..140082(+) (helD) [Leuconostoc carnosum strain AMS1]
TTGGATAATCAAACTAAAATTGAAGAAACACAGTATCTTGAAAAAACCCTCACTGAGATGAAAACATCTTTAAAATCGAC
TGAAACAGAAATCAAGCGTACTAATAAGAATATTAATACAGTATCTCAAAGTTGGGGAGAAGTTCGTCTTAAAACTGATA
CCTATTCTGGTATTGTTGAAACAGCGGCTTCTATTCGTCAACAACAACAAATGCTGTCTGAACGAGAAAACTCAAAAACA
CGAGCAGAACAACGTTTTGCAACTTTGACGAAACAAATTGATAAGCCATATTTTGCTCGAATTGATTTCAATGAATCAGT
GAGTGACAGTGGTGAAGCTGAAACAATTTACATCGGGTTGGGTTCATTTAGTGACGATAAAAATAAGTTTTTAGTTTATG
ATTGGCGTGCACCGGTGGCATCTATCTACTATGATGGTGGTATTGGGCAGGTTACTTATTTAACACCAGACGGTACTCAG
CAAGCTAATGTGATGCTTAAGCGTCAGTTCCAAATTGAAGATGGTGTCATCGTGACGTTGTTCGATACGGAAGAAGCCAT
TGGGGATGCCATGTTGATGAACGCCTTATCTGGGGAATCATCAACAAAAATGAAGTCCATTGTGACTACCATCCAAAAAG
AGCAAAATAAAATTATTCGTAATACAAGAGCAGATTTGTTATTTGTACAGGGAGCTGCTGGTTCTGGTAAAACTGCGGCT
GTTTTACAGCGTATTGCTTATTTACTCTATCGTTATCGTGGTAAATTGACGTCAGGACAGGTTGTGCTATTTAGCCCGAA
CCAACTATTTAACGACTATATTGATAATGTTTTGCCAGAACTTGGTGAACAAAATATGGTGCAAATGACGTTTTATCAAT
ATGCTTCTAGACGGTTACCTAAAATTAATGTGGAAACACTGCAGGAACGTTTTGAAAATGATATGACTGACGATAAAATC
AGTTTAGTTAAGGGTAGTTTGGCTATGTTTCATGCTTTATCTACGTACGCTGATCACCTCAATAGATCAGACATGAGAAT
ACGGCATTTGATGTTTCGTGGTGAACCATTAGTTAACAAGGAACGGATTACTGAAATTTACTATCAGTACAATGAAAATT
ATAAGTTAGGGCAACGATTAGAGGCAACTAGAGAGACATTACTACGTAGTTTGAATGCCCATATTAACTCAGAGATGCGT
AAAGAATGGGTTGAACTAGCCATTGAGAATCTGTCTAAGCAAGAATACGATGAGCTGGTTGGTGCCGGAAAAGTACGTAT
TGGGGATGATCAAGAACAAGATGCAGCATCACGCACGCGACAAACGCAATTAGGTAGTGGACCTAAAGAACGTGAATTTG
CTAGTGAAAAGTCTGAACGGCATTTCTTAGCTAAGCAAATTGTGACACAATCTCTCAGACCATTAGCGCGACAAATTCGT
CGGGGCAGTTTTTTAAATATCAATGCACAGTTTGTTGATTTTTTACGCCATGTGCATGAATATGTTGATTTGTCACAATT
TGGTATTGTTGATAATGACTGGCATAATCATGTAGAGCAGGTCATTGACTCCCTTAAAGCAAAAAGATTATCATTGGCAG
ATACAACGATGTATTTGTATTTGTATGACTTGATCACTGGCAAACACGGTGAACGTGACATTCGTTTTTTGTTTATTGAT
GAAATTCAAGACTACACGCCTTTTCAATTAGCGTTTTTAAAGTTTAGCTTTCCGTTAGCTAAATTTACTGTTTTAGGTGA
TTTAAACCAAGCGATTTTCACGAAAGACAATGCTCAGAATCTACAAACTGATTTTGCGACATTATTTGATACGGACCGTG
TTGAACAGGCCAAGTTAACACAAACTTATCGATCAACGCAACAAATTACTGATTTTACCAAATATATTTTACGTGACGGG
CAAGATATTACGGCTTTTAATCGTGAAGGCGAAAAGCCGAATATATGTGTCGCTGACTCTCAGCCTAAAATGATGACACA
ATTACGTCAGCAAATATTACAAAATAAGCAGGACAGCGAATCAACTGCTATTATTACTAAGACATTAGCTGATGCGCAAG
AGCTAATGGCAGAGTTGGGTGATAAATCCGTGACGTTAATTCAATCAGAAAATCAGCGATTGGCGCAAGGCGCCATTGTT
GTGCCCTCATATTTAGCTAAAGGGTTAGAGTTTGATGCTGTTATCATTTGGCATGCTGATGATACACGGTATGGTGATGA
TTCTCAACGACGCTTACTTTACACTGTTGCTAGCCGTGCGATGCATCGTCTCACGTTACTATCACAAGGTGAAATGACAA
CTTTGATTGATGATGTACCTCAACATTTATATGAGGTAAAGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(215-593)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(720-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0D895

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

37.531

100

0.382