Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Q3Y68_RS25380 Genome accession   NZ_CP130681
Coordinates   5692503..5694236 (-) Length   577 a.a.
NCBI ID   WP_102931589.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS CX7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5687503..5699236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y68_RS25370 (Q3Y68_25370) - 5689295..5690496 (+) 1202 Protein_5015 RNA polymerase sigma factor -
  Q3Y68_RS25375 (Q3Y68_25375) rcrQ 5690575..5692503 (-) 1929 WP_263548973.1 ABC transporter ATP-binding protein Regulator
  Q3Y68_RS25380 (Q3Y68_25380) rcrP 5692503..5694236 (-) 1734 WP_102931589.1 ABC transporter ATP-binding protein Regulator
  Q3Y68_RS25385 (Q3Y68_25385) - 5694392..5695840 (-) 1449 WP_102931588.1 FGGY-family carbohydrate kinase -
  Q3Y68_RS25390 (Q3Y68_25390) - 5695889..5696194 (-) 306 WP_164712967.1 YtxH domain-containing protein -
  Q3Y68_RS25410 (Q3Y68_25410) - 5696814..5696966 (-) 153 WP_164712968.1 hypothetical protein -
  Q3Y68_RS25415 (Q3Y68_25415) - 5697034..5698452 (-) 1419 WP_165285501.1 GAF domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62540.75 Da        Isoelectric Point: 6.1941

>NTDB_id=786574 Q3Y68_RS25380 WP_102931589.1 5692503..5694236(-) (rcrP) [Streptomyces sp. HUAS CX7]
MLIRLLRTYLRPYKKPIALLVALQFLQTCASLYLPTLNADIIDNGVVEGDSGYILSYGALMIGISLAQVVCNIGAVFYGA
RTAAALGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMSFTLMVSAPIMCVGGIVMALGLDVPLSGV
LLGVVPVLAICVTLIVRKLRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTELTEVSLGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTESSVVP
PVAPVTELRRHGHLEIREAGFRYPGAEEPVLRNIGLVAKPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVNGVDVR
TVDPKTLAKVVSLVPQKPYLFAGTVATNLRYGNPDATDEELWHALAVAQAKEFVSELEGGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGVGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=786574 Q3Y68_RS25380 WP_102931589.1 5692503..5694236(-) (rcrP) [Streptomyces sp. HUAS CX7]
GTGCTCATACGACTACTGCGGACCTATCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGGCGCTGCAGTTCCTGCA
GACCTGCGCCTCCCTCTACCTGCCGACCCTGAACGCGGACATCATCGACAACGGTGTCGTGGAAGGTGACTCGGGCTACA
TCCTGAGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTGGTCTGCAACATCGGTGCCGTCTTCTACGGCGCG
CGCACCGCCGCCGCGCTCGGCCGGGACGTGCGCGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTGGG
CCACTTCGGCGCGCCCTCGCTGATCACGCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGTCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGCTCGGGGTCGTGCCGGTGCTGGCGATCTGCGTCACGCTGATCGTGCGGAAGCTGCGCCCGCTGTTCCGGAAGATGCA
GGTGCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGTTTCCGGAAGGCCAACACCGAGCTGACCGAGGTGTCCCTCGGCACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGGGACCGAGAGCAGTGTGGTGCCG
CCGGTGGCGCCGGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGATCCGGGAGGCGGGCTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTCAGGAACATCGGCCTGGTGGCCAAGCCGGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCGACGCTGCTGGGCCTGGTCCCCCGGCTCTTCGACGCCACCGACGGGGAGGTCCTGGTCAACGGCGTGGACGTGCGC
ACCGTGGACCCGAAGACGCTGGCCAAGGTGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCGCCGGCACCGTCGCGAC
CAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGCGGTGGCGCAGGCCAAGGAGTTCG
TCTCCGAGCTGGAGGGCGGGCTCGACGCGCCGATCTCCCAGGGCGGCACCAACGTGTCCGGCGGTCAGCGCCAGCGGCTC
GCCATCGCGCGGACGCTGGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCCGCGCTGGCCCAGGAGACCGCCGAGGCGACGGTGGTCATCGTGGCGCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTGCTGGACGAGGGGCGGGTGGTCGGCGTGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.076

97.574

0.381