Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q3Y68_RS25375 Genome accession   NZ_CP130681
Coordinates   5690575..5692503 (-) Length   642 a.a.
NCBI ID   WP_263548973.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS CX7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5685575..5697503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y68_RS25360 (Q3Y68_25360) - 5685949..5687214 (+) 1266 WP_233646737.1 NAD(P)/FAD-dependent oxidoreductase -
  Q3Y68_RS25365 (Q3Y68_25365) dnaG 5687245..5689170 (+) 1926 WP_125631851.1 DNA primase -
  Q3Y68_RS25370 (Q3Y68_25370) - 5689295..5690496 (+) 1202 Protein_5015 RNA polymerase sigma factor -
  Q3Y68_RS25375 (Q3Y68_25375) rcrQ 5690575..5692503 (-) 1929 WP_263548973.1 ABC transporter ATP-binding protein Regulator
  Q3Y68_RS25380 (Q3Y68_25380) rcrP 5692503..5694236 (-) 1734 WP_102931589.1 ABC transporter ATP-binding protein Regulator
  Q3Y68_RS25385 (Q3Y68_25385) - 5694392..5695840 (-) 1449 WP_102931588.1 FGGY-family carbohydrate kinase -
  Q3Y68_RS25390 (Q3Y68_25390) - 5695889..5696194 (-) 306 WP_164712967.1 YtxH domain-containing protein -
  Q3Y68_RS25410 (Q3Y68_25410) - 5696814..5696966 (-) 153 WP_164712968.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69537.82 Da        Isoelectric Point: 5.5586

>NTDB_id=786573 Q3Y68_RS25375 WP_263548973.1 5690575..5692503(-) (rcrQ) [Streptomyces sp. HUAS CX7]
MAGPAGRMMAGGGPDQRSMDFKGSSKRLVAQFRPERATLFTLLACVVVSVGLNVVGPKILGRATDLVFAGIVGRDMPSGA
TKEQVLDSMREHGDGNVADMLRSTDFTPGQGIDFGAVGEVLLLALATFAVAGLLMAVATRLVNRTVNRTMFRLREHVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPQFVQQWRSTGALNAHIEEMYTGHALVKVFGRQEESAKQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGQLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPIPGARPEDLRGRVELE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHAELLAADGAYARLYKAQFAEAVAE
VG

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=786573 Q3Y68_RS25375 WP_263548973.1 5690575..5692503(-) (rcrQ) [Streptomyces sp. HUAS CX7]
ATGGCCGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGCCCCGACCAGCGTTCGATGGACTTCAAGGGGTCGAGCAAACG
GCTCGTCGCCCAGTTCCGGCCGGAGCGGGCGACGCTGTTCACGCTGCTGGCCTGCGTGGTCGTCAGCGTCGGCCTCAACG
TGGTCGGGCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCCGGGGCC
ACGAAGGAGCAGGTCCTGGACTCCATGCGCGAGCACGGTGACGGCAACGTCGCCGACATGCTCCGCAGCACGGACTTCAC
CCCCGGCCAGGGCATCGACTTCGGCGCGGTGGGCGAGGTGCTGCTCCTGGCGCTGGCGACCTTCGCGGTGGCCGGCCTGC
TGATGGCGGTGGCGACGCGGCTGGTCAACCGCACGGTCAACCGGACGATGTTCCGGCTGCGCGAGCACGTGCAGACGAAG
CTGTCCCGGCTGCCGCTGTCCTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTGAGCCGCGCGACCAACGACATCGACAA
CATCCAGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCCCTGGTGACCGTGCCGCTGTCCTTCGTGGTGGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCGACGGGCGCGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCCGCGAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGCGGTCTGCGGGTGGCCTCGGGCCAGCTGTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCGTCGGCGGAGCGGATCTTCGAGC
TCCTGGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGCGCCCGCCCGGAGGACCTGCGCGGCCGGGTGGAGCTGGAG
CACGTCTCCTTCCGCTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAGCCGGGCCACACGGTCGC
CATCGTCGGCCCGACGGGCGCGGGCAAGACGACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGA
TCACCCTGGACGGCGTCGACATCGCGAAGATGTCCCGGGACGAGCTGCGGGCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGAGGTCACCCGCGGGGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCCGACCGGTTCGTACGGACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTGCTGGACGAG
GCGACGTCGTCGGTGGACACGCGGACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTGGTCATGGAGGACGGGGCGATCGTGGAGCAGG
GGGCGCACGCGGAGCTGCTGGCGGCGGATGGCGCGTACGCGCGGCTGTACAAGGCTCAGTTCGCGGAGGCTGTGGCCGAG
GTGGGGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(40-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.894

97.04

0.407