Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   Q3Y68_RS15755 Genome accession   NZ_CP130681
Coordinates   3581027..3583012 (-) Length   661 a.a.
NCBI ID   WP_304381926.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS CX7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3576027..3588012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y68_RS15735 (Q3Y68_15735) - 3576941..3577432 (+) 492 WP_061443134.1 transglycosylase SLT domain-containing protein -
  Q3Y68_RS15740 (Q3Y68_15740) - 3577455..3578264 (-) 810 WP_304380524.1 HAD family hydrolase -
  Q3Y68_RS15745 (Q3Y68_15745) fahA 3578564..3579799 (+) 1236 WP_233645947.1 fumarylacetoacetase -
  Q3Y68_RS15750 (Q3Y68_15750) - 3580050..3580988 (+) 939 WP_102928019.1 M56 family metallopeptidase -
  Q3Y68_RS15755 (Q3Y68_15755) recQ 3581027..3583012 (-) 1986 WP_304381926.1 DNA helicase RecQ Machinery gene
  Q3Y68_RS15760 (Q3Y68_15760) - 3583241..3583372 (+) 132 Protein_3133 Uma2 family endonuclease -
  Q3Y68_RS15765 (Q3Y68_15765) nuoN 3583461..3585119 (-) 1659 WP_134654585.1 NADH-quinone oxidoreductase subunit NuoN -
  Q3Y68_RS15770 (Q3Y68_15770) - 3585116..3586687 (-) 1572 WP_176154233.1 NADH-quinone oxidoreductase subunit M -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71578.00 Da        Isoelectric Point: 5.0883

>NTDB_id=786547 Q3Y68_RS15755 WP_304381926.1 3581027..3583012(-) (recQ) [Streptomyces sp. HUAS CX7]
MGGTGVIGEMAETAQVRDGDSEALATLHRVFGYDAFRGEQEAIVEHVIAGGDAVVLMPTGGGKSLCYQIPSLVRPGTGIV
VSPLIALMQDQVDALRALGVRAGFMNSTQDFDERRVTEAEFLAGELDLLYLAPERLRLDSTLDLLSRGKISLFAIDEAHC
VSQWGHDFRPDYLALSLLGERWPDVPRLALTATATDATHREITERLHMPAARHFVASFDRPNIQYRIVPKSDPKKQLLGF
LRQEHPGDAGIVYCLSRNSVEKTAEFLSRNGVEAVPYHAGLDAGTRAAHQSRFLREEGLVVVATIAFGMGIDKPDVRFVA
HLDLPKSVEGYYQETGRAGRDGLPSTAWMAYGLNDVIQQRKLIQSGEGDEAFRRRAQSHLDAMLALCETARCRRGQLLAY
FGQDPDGAGCGNCDTCLTPPETWDGTVAAQKVLSTVVRLKRERGQKFGAGQIIDILLGKRTAKVIQFDHDQLSVFGIGEE
LTEGEWRGVARQLLAQGLLAVEGEYGTLVLTDTSGEVLRREREVPLRKEPKKPAAARSAGGGRGERKAKAAAAELPAELV
PAFEALRAWRAEQAREQGVPAYVIFHDATLREIATVWPTSVAQLGGISGVGEKKLATYGEGVVGVLAALEGPATDGGGPA
GEEEWGPEPEPGPEPEPDDWA

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=786547 Q3Y68_RS15755 WP_304381926.1 3581027..3583012(-) (recQ) [Streptomyces sp. HUAS CX7]
ATGGGCGGGACGGGCGTGATCGGCGAGATGGCAGAGACGGCGCAGGTGAGGGACGGGGACAGCGAGGCGCTGGCCACCCT
GCACCGGGTCTTCGGATACGACGCCTTCCGCGGTGAGCAGGAGGCGATCGTCGAGCACGTGATCGCCGGCGGTGACGCCG
TCGTGCTCATGCCGACCGGCGGCGGAAAGTCCCTGTGCTACCAGATTCCGTCCCTGGTCAGGCCCGGCACGGGCATCGTG
GTCTCGCCGCTGATCGCGCTGATGCAGGACCAGGTCGACGCGCTGCGGGCGCTCGGCGTGCGGGCGGGGTTCATGAACTC
CACGCAGGACTTCGACGAGCGGCGCGTGACCGAGGCCGAGTTCCTCGCCGGGGAGCTGGACCTGCTGTACCTGGCGCCCG
AGCGGCTGCGCCTGGACAGCACCCTCGACCTGCTCTCCCGCGGCAAGATCTCCCTCTTCGCCATCGACGAGGCGCACTGC
GTGTCGCAGTGGGGCCACGACTTCCGGCCCGACTACCTCGCCCTGTCCCTGCTCGGCGAGCGCTGGCCGGACGTGCCCCG
CCTCGCGCTCACGGCGACGGCCACCGACGCCACCCACCGCGAGATCACCGAGCGGCTGCACATGCCGGCGGCGCGGCACT
TCGTGGCCAGCTTCGACCGGCCCAACATCCAGTACCGGATCGTGCCGAAGTCCGACCCCAAGAAGCAGCTCCTGGGCTTC
CTGCGGCAGGAGCACCCCGGGGACGCCGGCATCGTGTACTGCCTCTCGCGCAACTCGGTGGAGAAGACCGCCGAGTTCCT
CTCGCGCAACGGAGTCGAGGCGGTGCCGTACCACGCGGGCCTGGACGCGGGCACCCGCGCCGCGCACCAGTCGAGGTTCC
TGCGCGAGGAGGGCCTGGTCGTCGTGGCGACCATCGCCTTCGGCATGGGCATCGACAAGCCCGACGTGCGGTTCGTCGCC
CACCTGGACCTGCCCAAGTCGGTCGAGGGCTACTACCAGGAGACCGGCCGCGCGGGGCGGGACGGTCTGCCCTCCACGGC
ATGGATGGCTTACGGCCTCAACGACGTCATACAGCAGCGCAAGCTGATCCAGTCCGGCGAGGGCGACGAGGCCTTCCGGC
GCCGCGCCCAGTCCCATCTGGACGCCATGCTCGCCCTGTGCGAGACCGCCCGGTGCCGTCGCGGCCAGCTCCTCGCCTAC
TTCGGACAGGACCCGGACGGGGCCGGCTGCGGCAACTGCGACACCTGCCTGACCCCTCCCGAGACCTGGGACGGCACGGT
GGCGGCGCAGAAGGTGCTGTCGACGGTGGTGCGGCTGAAGCGCGAGCGCGGGCAGAAGTTCGGCGCCGGGCAGATCATCG
ACATCCTGCTGGGCAAGCGCACCGCCAAGGTGATCCAGTTCGACCACGACCAGCTCTCCGTGTTCGGCATCGGCGAGGAG
CTGACCGAGGGCGAGTGGCGGGGCGTCGCCCGGCAGCTGCTGGCCCAGGGCCTGCTCGCGGTCGAGGGGGAGTACGGCAC
GCTGGTGCTGACCGACACCAGCGGCGAGGTCCTGCGGCGCGAGCGGGAGGTGCCGCTGCGCAAGGAGCCCAAGAAGCCCG
CCGCGGCCAGGTCGGCGGGCGGTGGACGCGGCGAGCGCAAGGCGAAGGCGGCCGCGGCCGAGCTGCCCGCGGAGCTGGTC
CCCGCCTTCGAGGCACTGCGCGCCTGGCGTGCGGAACAGGCCCGCGAGCAGGGCGTCCCGGCGTACGTCATCTTCCACGA
CGCCACCCTCCGGGAGATCGCCACCGTCTGGCCCACCTCGGTGGCGCAGCTCGGCGGCATCAGCGGGGTCGGTGAGAAGA
AGCTGGCGACGTACGGGGAGGGCGTGGTCGGCGTGCTGGCCGCACTGGAGGGCCCGGCCACCGACGGAGGAGGACCGGCG
GGGGAGGAGGAATGGGGCCCCGAGCCCGAGCCGGGACCGGAGCCCGAGCCCGACGACTGGGCGTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(236-341)

DEAD/DEAH box helicase (DEAD)

(40-196)

HRDC domain (HRDC)

(563-625)

RQC domain (RQC)

(419-533)

RecQ zinc-binding (RecQ_Zn_bind)

(354-417)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.767

90.923

0.362