Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   Q3Y68_RS12950 Genome accession   NZ_CP130681
Coordinates   2978840..2979823 (-) Length   327 a.a.
NCBI ID   WP_102930858.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS CX7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2973840..2984823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y68_RS12925 (Q3Y68_12925) - 2974176..2975039 (+) 864 WP_165286299.1 helix-turn-helix transcriptional regulator -
  Q3Y68_RS12930 (Q3Y68_12930) - 2975036..2975233 (+) 198 WP_165286298.1 DUF397 domain-containing protein -
  Q3Y68_RS12935 (Q3Y68_12935) - 2975223..2975417 (-) 195 WP_030145837.1 hypothetical protein -
  Q3Y68_RS12940 (Q3Y68_12940) - 2975604..2977727 (+) 2124 WP_304380417.1 S9 family peptidase -
  Q3Y68_RS12945 (Q3Y68_12945) - 2977729..2978847 (-) 1119 WP_249338591.1 ABC transporter ATP-binding protein -
  Q3Y68_RS12950 (Q3Y68_12950) amiE 2978840..2979823 (-) 984 WP_102930858.1 ABC transporter ATP-binding protein Regulator
  Q3Y68_RS12955 (Q3Y68_12955) - 2979832..2980812 (-) 981 WP_164712822.1 ABC transporter permease -
  Q3Y68_RS12960 (Q3Y68_12960) - 2980805..2981728 (-) 924 WP_102930859.1 ABC transporter permease -
  Q3Y68_RS12965 (Q3Y68_12965) - 2981742..2983376 (-) 1635 WP_102930860.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35939.67 Da        Isoelectric Point: 6.4999

>NTDB_id=786542 Q3Y68_RS12950 WP_102930858.1 2978840..2979823(-) (amiE) [Streptomyces sp. HUAS CX7]
MLLEVRDLHVEFHTRDGVAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQTVMGILDIPPGRVTAGEILFEGRDLLKLKE
EERRKVRGAEMAMIFQDALSSLNPVLTVGAQLAEMFTVHRGMSRKDAHAKAVELMDRVRIPAARERVKQYPHQFSGGMRQ
RIMIAMAMALEPKLIIADEPTTALDVTVQAQVMDLLAELQRELHMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHD
IYKAPAHPYTRGLLESIPRLDQKGQELYAIKGLPPNLTRIPPGCAFHPRCPMAQDVCRTDVPPLYDVTESDAERGSACHF
WRECLHG

Nucleotide


Download         Length: 984 bp        

>NTDB_id=786542 Q3Y68_RS12950 WP_102930858.1 2978840..2979823(-) (amiE) [Streptomyces sp. HUAS CX7]
ATGCTGCTCGAAGTGCGCGACCTGCACGTGGAGTTCCACACCCGCGACGGCGTCGCCAAGGCCGTCAACGGCGTCAGCTA
CGGCGTGGACGCGGGCGAGACCCTCGCGGTGCTCGGCGAGTCCGGCTCCGGCAAGTCCGTCACCGCCCAGACGGTCATGG
GCATCCTCGACATCCCGCCGGGCAGGGTCACCGCGGGGGAGATCCTCTTCGAGGGCCGGGACCTGCTGAAGCTGAAGGAG
GAGGAACGCCGGAAGGTCCGCGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCCGTCCTGAC
CGTCGGCGCCCAGCTCGCCGAGATGTTCACCGTGCACCGCGGCATGTCCCGCAAGGACGCCCACGCCAAGGCCGTCGAGC
TGATGGACCGGGTGCGCATCCCGGCCGCCAGGGAGCGGGTGAAGCAGTATCCGCACCAGTTCTCCGGCGGTATGCGCCAG
CGCATCATGATCGCGATGGCGATGGCCCTGGAGCCCAAGCTGATCATCGCCGACGAACCGACCACCGCGCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGATCTGCTCGCGGAGCTCCAGCGCGAGCTGCACATGGGGCTCATCCTCATCACCCACGACC
TCGGTGTGGTCGCCGACGTCGCGGACAAGATCGCGGTCATGTACGCGGGCCGCATCGTGGAGACGGCCCCGGTCCACGAC
ATCTACAAGGCACCCGCTCACCCGTACACCCGCGGCCTCCTGGAATCCATCCCGCGCCTCGACCAGAAGGGCCAGGAGCT
CTACGCCATCAAGGGCCTGCCGCCCAACCTCACCCGCATCCCGCCCGGCTGCGCCTTCCACCCCCGCTGCCCGATGGCGC
AGGACGTCTGCCGCACCGACGTACCGCCGCTGTACGACGTGACGGAGTCCGACGCCGAGCGGGGCAGCGCCTGCCACTTC
TGGAGGGAGTGCCTGCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.5

97.859

0.465
  amiE Streptococcus thermophilus LMG 18311

46.875

97.859

0.459
  amiE Streptococcus thermophilus LMD-9

46.875

97.859

0.459
  oppD Streptococcus mutans UA159

47.573

94.495

0.45