Detailed information NTG0786528

Bioinformatically predicted

Overview

• Name: sxy/tfoX
• Type: Regulator
• Locus tag: PS042_RS15430
• Genome accession: NZ_CP117586
• Coordinates: 3073485..3074114 (-)
• Length: 209 a.a.
• NCBI ID: WP_000839162.1
• Uniprot ID: A0A2T3RS91
• Organism: Escherichia albertii strain BIA_40
• Function: positive regulator of competence gene (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	3059576..3073914	3073485..3074114	flank	-429

Gene organization within MGE regions

Location: 3059576..3074114

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PS042_RS15360 (PS042_15360)	-	3059639..3062119 (+)	2481	WP_025237254.1	exonuclease	-
PS042_RS15365 (PS042_15365)	-	3062186..3062437 (+)	252	WP_000273158.1	DUF4224 domain-containing protein	-
PS042_RS15370 (PS042_15370)	-	3062406..3063425 (+)	1020	WP_024227504.1	tyrosine-type recombinase/integrase	-
PS042_RS15375 (PS042_15375)	yccA	3063834..3064493 (+)	660	WP_000375136.1	FtsH protease modulator YccA	-
PS042_RS15380 (PS042_15380)	tusE	3064585..3064914 (+)	330	WP_024164819.1	sulfurtransferase TusE	-
PS042_RS15385 (PS042_15385)	yccX	3064911..3065189 (-)	279	WP_000048219.1	acylphosphatase	-
PS042_RS15390 (PS042_15390)	rlmI	3065283..3066473 (+)	1191	WP_059215636.1	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	-
PS042_RS15395 (PS042_15395)	hspQ	3066531..3066848 (+)	318	WP_001295356.1	heat shock protein HspQ	-
PS042_RS15400 (PS042_15400)	-	3066893..3067306 (-)	414	WP_002462360.1	CoA-binding protein	-
PS042_RS15405 (PS042_15405)	-	3067479..3068141 (+)	663	WP_000847777.1	DUF2057 family protein	-
PS042_RS15410 (PS042_15410)	mgsA	3068237..3068695 (+)	459	WP_000424182.1	methylglyoxal synthase	-
PS042_RS15415 (PS042_15415)	helD	3068727..3070781 (-)	2055	WP_059215651.1	DNA helicase IV	-
PS042_RS15420 (PS042_15420)	-	3070904..3071350 (+)	447	WP_001261228.1	YccF domain-containing protein	-
PS042_RS15425 (PS042_15425)	yccS	3071360..3073525 (+)	2166	WP_072244615.1	YccS family putative transporter	-
PS042_RS15430 (PS042_15430)	sxy/tfoX	3073485..3074114 (-)	630	WP_000839162.1	TfoX/Sxy family DNA transformation protein	Regulator

Sequence

Protein

• Length: 209 a.a.
• Molecular weight: 24291.21 Da
• Isoelectric Point: 9.0264

>NTDB_id=786528 PS042_RS15430 WP_000839162.1 3073485..3074114(-) (sxy/tfoX) [Escherichia albertii strain BIA_40]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide

• Length: 630 bp

>NTDB_id=786528 PS042_RS15430 WP_000839162.1 3073485..3074114(-) (sxy/tfoX) [Escherichia albertii strain BIA_40]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

• TfoX C-terminal domain (TfoX_C) (117-194)

• TfoX N-terminal domain (TfoX_N) (14-106)

3D structure

• AlphaFold DB: A0A2T3RS91

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sxy/tfoX	Escherichia coli BW25113 strain K-12	90.431	100	0.904