Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PS037_RS00390 Genome accession   NZ_CP117575
Coordinates   84418..85047 (+) Length   209 a.a.
NCBI ID   WP_000839162.1    Uniprot ID   A0A2T3RS91
Organism   Escherichia albertii strain BIA_5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 79418..90047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS037_RS00370 (PS037_00370) - 79811..81571 (-) 1761 WP_000156441.1 AAA family ATPase -
  PS037_RS00375 (PS037_00375) matP 81757..82209 (+) 453 WP_000877164.1 macrodomain Ter protein MatP -
  PS037_RS00380 (PS037_00380) ompA 82283..83335 (-) 1053 WP_024164823.1 porin OmpA -
  PS037_RS00385 (PS037_00385) sulA 83691..84200 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  PS037_RS00390 (PS037_00390) sxy/tfoX 84418..85047 (+) 630 WP_000839162.1 TfoX/Sxy family DNA transformation protein Regulator
  PS037_RS00395 (PS037_00395) yccS 85007..87172 (-) 2166 WP_000875014.1 YccS family putative transporter -
  PS037_RS00400 (PS037_00400) - 87182..87628 (-) 447 WP_001261228.1 YccF domain-containing protein -
  PS037_RS00405 (PS037_00405) helD 87751..89805 (+) 2055 WP_059276666.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=786448 PS037_RS00390 WP_000839162.1 84418..85047(+) (sxy/tfoX) [Escherichia albertii strain BIA_5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786448 PS037_RS00390 WP_000839162.1 84418..85047(+) (sxy/tfoX) [Escherichia albertii strain BIA_5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCAGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

90.431

100

0.904