Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PS053_RS00395 Genome accession   NZ_CP117568
Coordinates   85663..86292 (+) Length   209 a.a.
NCBI ID   WP_256879330.1    Uniprot ID   -
Organism   Escherichia albertii strain BIA_5-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 80663..91292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS053_RS00375 (PS053_00375) matP 82290..82742 (+) 453 WP_000877164.1 macrodomain Ter protein MatP -
  PS053_RS00380 (PS053_00380) tnpA 82950..83408 (+) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  PS053_RS00385 (PS053_00385) ompA 83528..84580 (-) 1053 WP_024164823.1 porin OmpA -
  PS053_RS00390 (PS053_00390) sulA 84936..85445 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  PS053_RS00395 (PS053_00395) sxy/tfoX 85663..86292 (+) 630 WP_256879330.1 TfoX/Sxy family DNA transformation protein Regulator
  PS053_RS00400 (PS053_00400) yccS 86252..88417 (-) 2166 WP_072248637.1 YccS family putative transporter -
  PS053_RS00405 (PS053_00405) - 88427..88873 (-) 447 WP_001261228.1 YccF domain-containing protein -
  PS053_RS00410 (PS053_00410) helD 88996..91050 (+) 2055 WP_256879338.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24333.24 Da        Isoelectric Point: 9.0097

>NTDB_id=786403 PS053_RS00395 WP_256879330.1 85663..86292(+) (sxy/tfoX) [Escherichia albertii strain BIA_5-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKYPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLESILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786403 PS053_RS00395 WP_256879330.1 85663..86292(+) (sxy/tfoX) [Escherichia albertii strain BIA_5-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAATATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGTCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAGATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.474

100

0.895