Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LLID5_RS09115 Genome accession   NZ_AP025701
Coordinates   1904373..1905044 (-) Length   223 a.a.
NCBI ID   WP_098384079.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899373..1910044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS09090 (LLID5_17950) pheA 1899678..1900517 (-) 840 WP_014570689.1 prephenate dehydratase -
  LLID5_RS09095 (LLID5_17960) - 1900519..1901007 (-) 489 WP_251918518.1 shikimate kinase -
  LLID5_RS09100 (LLID5_17970) aroA 1901031..1902323 (-) 1293 WP_251918519.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  LLID5_RS09105 (LLID5_17980) - 1902444..1903508 (-) 1065 WP_251918520.1 prephenate dehydrogenase -
  LLID5_RS09110 (LLID5_17990) - 1903511..1904386 (-) 876 WP_003132784.1 sensor histidine kinase -
  LLID5_RS09115 (LLID5_18000) braR 1904373..1905044 (-) 672 WP_098384079.1 response regulator transcription factor Regulator
  LLID5_RS09120 (LLID5_18010) - 1905047..1906111 (-) 1065 WP_251918522.1 VanZ family protein -
  LLID5_RS09125 (LLID5_18020) - 1906292..1908292 (-) 2001 WP_029344276.1 FtsX-like permease family protein -
  LLID5_RS09130 (LLID5_18030) - 1908285..1909064 (-) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  LLID5_RS09135 (LLID5_18040) - 1909253..1909612 (-) 360 WP_012898331.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25496.41 Da        Isoelectric Point: 4.8093

>NTDB_id=78640 LLID5_RS09115 WP_098384079.1 1904373..1905044(-) (braR) [Lactococcus lactis strain ID-5]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEVGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=78640 LLID5_RS09115 WP_098384079.1 1904373..1905044(-) (braR) [Lactococcus lactis strain ID-5]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAGTTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGATATGAATCAAGTAACCGCCATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAGTTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.991

99.552

0.408

Multiple sequence alignment