Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Q4437_RS07195 Genome accession   NZ_CP130651
Coordinates   1594589..1596133 (-) Length   514 a.a.
NCBI ID   WP_005483461.1    Uniprot ID   Q87PN2
Organism   Vibrio parahaemolyticus strain HZ     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1589589..1601133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4437_RS07175 (Q4437_07175) - 1589603..1591033 (-) 1431 WP_005483422.1 lipopolysaccharide biosynthesis protein -
  Q4437_RS07180 (Q4437_07180) - 1591026..1592198 (-) 1173 WP_005483470.1 glycosyltransferase family 4 protein -
  Q4437_RS07185 (Q4437_07185) - 1592209..1593393 (-) 1185 WP_005483478.1 glycosyltransferase -
  Q4437_RS07190 (Q4437_07190) - 1593544..1594614 (-) 1071 WP_005483417.1 glycosyltransferase family 4 protein -
  Q4437_RS07195 (Q4437_07195) luxO 1594589..1596133 (-) 1545 WP_005483461.1 sigma-54 dependent transcriptional regulator Regulator
  Q4437_RS07200 (Q4437_07200) - 1596405..1596785 (-) 381 WP_005454845.1 Hpt domain-containing protein -
  Q4437_RS07205 (Q4437_07205) - 1596798..1597484 (-) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  Q4437_RS07210 (Q4437_07210) - 1597484..1599550 (-) 2067 WP_053314831.1 SLBB domain-containing protein -
  Q4437_RS07215 (Q4437_07215) - 1599583..1600485 (-) 903 WP_005491469.1 OmpA family protein -
  Q4437_RS07220 (Q4437_07220) - 1600512..1600832 (-) 321 WP_005454817.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57376.18 Da        Isoelectric Point: 5.7274

>NTDB_id=786378 Q4437_RS07195 WP_005483461.1 1594589..1596133(-) (luxO) [Vibrio parahaemolyticus strain HZ]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKTLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTPPIEPVQPVQEAPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=786378 Q4437_RS07195 WP_005483461.1 1594589..1596133(-) (luxO) [Vibrio parahaemolyticus strain HZ]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGTAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTAGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAACGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAGCATTTTCTCACGACTTACGCCAAAGAGGACAAGAAGAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTACCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACCACCCATTGAGCCAGT
GCAACCTGTTCAAGAGGCGCCTGCGCAACAAACACAGCCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCCTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3CFY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

48.898

97.082

0.475