Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   Q4437_RS06585 Genome accession   NZ_CP130651
Coordinates   1436565..1437545 (-) Length   326 a.a.
NCBI ID   WP_005454798.1    Uniprot ID   Q87Q07
Organism   Vibrio parahaemolyticus strain HZ     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1431565..1442545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4437_RS06575 (Q4437_06575) - 1432064..1434508 (+) 2445 WP_005480704.1 collagenase -
  Q4437_RS06580 (Q4437_06580) - 1434759..1436555 (-) 1797 WP_005454994.1 aminopeptidase P family protein -
  Q4437_RS06585 (Q4437_06585) amiE 1436565..1437545 (-) 981 WP_005454798.1 ABC transporter ATP-binding protein Regulator
  Q4437_RS06590 (Q4437_06590) - 1437555..1438538 (-) 984 WP_005454909.1 ABC transporter ATP-binding protein -
  Q4437_RS06595 (Q4437_06595) - 1438549..1439481 (-) 933 WP_005480729.1 ABC transporter permease subunit -
  Q4437_RS06600 (Q4437_06600) oppB 1439491..1440411 (-) 921 WP_005454907.1 oligopeptide ABC transporter permease OppB -
  Q4437_RS06605 (Q4437_06605) - 1440578..1442188 (-) 1611 WP_005480699.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36406.21 Da        Isoelectric Point: 8.3113

>NTDB_id=786376 Q4437_RS06585 WP_005454798.1 1436565..1437545(-) (amiE) [Vibrio parahaemolyticus strain HZ]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=786376 Q4437_RS06585 WP_005454798.1 1436565..1437545(-) (amiE) [Vibrio parahaemolyticus strain HZ]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGATCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCACGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGCGCCTTAATTCTCAATCCGGACTTAGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTCTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGTCATATCAGCGACCGAGTAATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCTTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87Q07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiF Streptococcus salivarius strain HSISS4

45.455

84.356

0.383
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus thermophilus LMG 18311

45.421

83.742

0.38
  amiF Streptococcus thermophilus LMD-9

45.055

83.742

0.377
  oppD Streptococcus mutans UA159

38.339

96.012

0.368