Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   LLID5_RS08600 Genome accession   NZ_AP025701
Coordinates   1791508..1792506 (-) Length   332 a.a.
NCBI ID   WP_003129447.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1786508..1797506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS08580 (LLID5_16940) trxA 1786898..1787212 (-) 315 WP_003129442.1 thioredoxin -
  LLID5_RS08585 (LLID5_16950) mutS/mutS2 1787309..1789639 (-) 2331 WP_226319324.1 endonuclease MutS2 Machinery gene
  LLID5_RS08590 (LLID5_16960) - 1789684..1790244 (-) 561 WP_003129445.1 CvpA family protein -
  LLID5_RS08595 (LLID5_16970) - 1790404..1791369 (-) 966 WP_251918463.1 NAD(P)/FAD-dependent oxidoreductase -
  LLID5_RS08600 (LLID5_16980) ccpA 1791508..1792506 (-) 999 WP_003129447.1 catabolite control protein A Regulator
  LLID5_RS08605 (LLID5_16990) - 1792721..1793809 (+) 1089 WP_058203077.1 Xaa-Pro peptidase family protein -
  LLID5_RS08610 (LLID5_17000) - 1794117..1796120 (-) 2004 WP_251918465.1 cell division site-positioning protein MapZ family protein -
  LLID5_RS08615 (LLID5_17010) - 1796267..1797421 (-) 1155 WP_003129451.1 class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36602.71 Da        Isoelectric Point: 4.9196

>NTDB_id=78635 LLID5_RS08600 WP_003129447.1 1791508..1792506(-) (ccpA) [Lactococcus lactis strain ID-5]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=78635 LLID5_RS08600 WP_003129447.1 1791508..1792506(-) (ccpA) [Lactococcus lactis strain ID-5]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACCTCCCTCAAAAATTCAAGAACACCTGTTGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGCGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGAACGTATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  ccpA Streptococcus pneumoniae D39

57.402

99.699

0.572
  ccpA Streptococcus gordonii str. Challis substr. CH1

57.1

99.699

0.569

Multiple sequence alignment