Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   Q4437_RS00805 Genome accession   NZ_CP130651
Coordinates   179742..180599 (+) Length   285 a.a.
NCBI ID   WP_005458930.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain HZ     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 174742..185599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4437_RS00790 (Q4437_00790) - 175797..176822 (+) 1026 WP_005458995.1 ABC transporter permease subunit -
  Q4437_RS00795 (Q4437_00795) - 176824..177867 (+) 1044 WP_005459031.1 ABC transporter permease -
  Q4437_RS00800 (Q4437_00800) - 177906..179732 (+) 1827 WP_005458972.1 extracellular solute-binding protein -
  Q4437_RS00805 (Q4437_00805) amiE 179742..180599 (+) 858 WP_005458930.1 ABC transporter ATP-binding protein Regulator
  Q4437_RS00810 (Q4437_00810) - 180636..181475 (+) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  Q4437_RS00815 (Q4437_00815) - 181605..182030 (+) 426 WP_005458957.1 phosphate-starvation-inducible protein PsiE -
  Q4437_RS00820 (Q4437_00820) - 182085..182951 (-) 867 WP_005459003.1 YicC/YloC family endoribonuclease -
  Q4437_RS00825 (Q4437_00825) rph 183166..183882 (+) 717 WP_005478751.1 ribonuclease PH -
  Q4437_RS00830 (Q4437_00830) pyrE 183987..184628 (+) 642 WP_005458955.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31670.75 Da        Isoelectric Point: 4.4929

>NTDB_id=786346 Q4437_RS00805 WP_005458930.1 179742..180599(+) (amiE) [Vibrio parahaemolyticus strain HZ]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKEREYYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=786346 Q4437_RS00805 WP_005458930.1 179742..180599(+) (amiE) [Vibrio parahaemolyticus strain HZ]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGATCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCCA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTTAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGCTAGGTAAAAAAGAGCGCGAAT
ACTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCACACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGACATTTTGATTTGTGATGAGCCAACGAC
AGCACTGGATGTAACAGTACAGGCGTCTATCCTTGAATTAATGAATGAACTTCAAGAAGAAACAGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTCGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMG 18311

48.227

98.947

0.477
  amiE Streptococcus thermophilus LMD-9

48.227

98.947

0.477
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361