Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q4V64_RS38585 Genome accession   NZ_CP130630
Coordinates   8587997..8589121 (+) Length   374 a.a.
NCBI ID   WP_124438787.1    Uniprot ID   -
Organism   Streptomyces sp. NL15-2K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8582997..8594121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4V64_RS38560 (Q4V64_38555) - 8584087..8584317 (+) 231 WP_124438791.1 hypothetical protein -
  Q4V64_RS38565 (Q4V64_38560) - 8584336..8585280 (-) 945 WP_124438790.1 hypothetical protein -
  Q4V64_RS38570 (Q4V64_38565) - 8585361..8585555 (+) 195 WP_124438789.1 DUF3046 domain-containing protein -
  Q4V64_RS38575 (Q4V64_38570) - 8585615..8586865 (+) 1251 WP_172629095.1 AI-2E family transporter -
  Q4V64_RS38580 (Q4V64_38575) - 8587092..8587664 (-) 573 WP_124438788.1 GNAT family N-acetyltransferase -
  Q4V64_RS38585 (Q4V64_38580) recA 8587997..8589121 (+) 1125 WP_124438787.1 recombinase RecA Machinery gene
  Q4V64_RS38590 (Q4V64_38585) recX 8589203..8589964 (+) 762 WP_124438814.1 recombination regulator RecX -
  Q4V64_RS38595 (Q4V64_38590) - 8590240..8590452 (+) 213 WP_124438786.1 hypothetical protein -
  Q4V64_RS38600 (Q4V64_38595) - 8590479..8590880 (-) 402 WP_124438785.1 rhodanese-like domain-containing protein -
  Q4V64_RS38605 (Q4V64_38600) - 8590928..8591473 (-) 546 WP_124438784.1 cysteine dioxygenase -
  Q4V64_RS55500 (Q4V64_55495) - 8591550..8591636 (-) 87 WP_313960178.1 putative leader peptide -
  Q4V64_RS38610 (Q4V64_38605) - 8591739..8593382 (-) 1644 WP_124438783.1 FAD-dependent monooxygenase -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39625.21 Da        Isoelectric Point: 6.6685

>NTDB_id=786308 Q4V64_RS38585 WP_124438787.1 8587997..8589121(+) (recA) [Streptomyces sp. NL15-2K]
MAGTDREKALDAALAQIERQFGKGAVMRMGDRSKEPIEVIPTGSTALDVALGVGGLPRGRVIEVYGPESSGKTTLTLHAV
ANAQKAGGQVAFVDAEHALDPEYAQKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGVGVRPEVPAVEPGADAAVSAAADDAAKAVPAPAAKAAKTKAAAVKS

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=786308 Q4V64_RS38585 WP_124438787.1 8587997..8589121(+) (recA) [Streptomyces sp. NL15-2K]
ATGGCAGGAACCGACCGCGAGAAGGCCCTGGACGCCGCCCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTCAT
GCGCATGGGCGACCGCTCGAAGGAGCCCATCGAGGTCATCCCGACCGGGTCGACCGCGCTCGACGTGGCCCTCGGCGTCG
GCGGTCTGCCGCGCGGCCGCGTCATCGAGGTCTACGGCCCCGAGTCCTCGGGTAAGACGACCCTGACCCTGCACGCGGTG
GCGAACGCACAGAAGGCCGGAGGCCAGGTCGCGTTCGTGGACGCGGAGCACGCCCTCGACCCCGAGTACGCGCAGAAGCT
CGGCGTCGACATCGACAACCTGATCCTGTCCCAGCCGGACAACGGCGAGCAGGCCCTGGAGATCGTGGACATGCTGGTCC
GCTCCGGCGCCCTCGACCTCATCGTCATCGACTCCGTCGCCGCGCTCGTCCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACAGTCACGTCGGTCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGGAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGGG
CACTGAAGTTCTACGCCTCGGTGCGACTCGACATCCGACGCATCGAGACGCTGAAGGACGGCACCGATGCGGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCACGG
CATCAGTCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCAGGCGCCTGGTACACGTACG
AGGGCGACCAGCTGGGCCAGGGCAAGGAGAACGCGCGCAACTTCCTGAAGGACAACCCCGACCTCGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTGGGCGTCGGAGTCCGGCCGGAGGTGCCGGCCGTCGAGCCGGGTGCGGACGCCGCGGTCTC
CGCCGCAGCGGACGACGCCGCGAAGGCGGTGCCCGCTCCGGCGGCCAAGGCTGCCAAGACCAAGGCCGCGGCGGTCAAGA
GCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

67.791

87.166

0.591
  recA Neisseria gonorrhoeae MS11

67.791

87.166

0.591
  recA Pseudomonas stutzeri DSM 10701

68.111

86.364

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

87.166

0.586
  recA Vibrio cholerae strain A1552

62.931

93.048

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.931

93.048

0.586
  recA Ralstonia pseudosolanacearum GMI1000

69.649

83.69

0.583
  recA Staphylococcus aureus strain ATCC 12600

66.871

87.166

0.583
  recA Acinetobacter baumannii D1279779

67.492

86.364

0.583
  recA Acinetobacter nosocomialis M2

67.183

86.364

0.58
  recA Acinetobacter baylyi ADP1

66.873

86.364

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

60.504

95.455

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

87.166

0.553
  recA Streptococcus pyogenes NZ131

62.424

88.235

0.551
  recA Helicobacter pylori strain NCTC11637

63.077

86.898

0.548
  recA Helicobacter pylori 26695

63.077

86.898

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

87.968

0.545
  recA Streptococcus thermophilus LMD-9

61.631

88.503

0.545
  recA Streptococcus thermophilus LMG 18311

61.631

88.503

0.545
  recA Streptococcus mutans UA159

61.631

88.503

0.545
  recA Streptococcus mitis NCTC 12261

61.329

88.503

0.543
  recA Streptococcus mitis SK321

61.329

88.503

0.543
  recA Streptococcus pneumoniae TIGR4

61.027

88.503

0.54
  recA Streptococcus pneumoniae D39

61.027

88.503

0.54
  recA Streptococcus pneumoniae Rx1

61.027

88.503

0.54
  recA Streptococcus pneumoniae R36A

61.027

88.503

0.54
  recA Streptococcus pneumoniae R6

61.027

88.503

0.54
  recA Glaesserella parasuis strain SC1401

62.422

86.096

0.537
  recA Lactococcus lactis subsp. cremoris KW2

60.121

88.503

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

85.561

0.508