Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   Q4V64_RS37635 Genome accession   NZ_CP130630
Coordinates   8354724..8356928 (+) Length   734 a.a.
NCBI ID   WP_124438958.1    Uniprot ID   -
Organism   Streptomyces sp. NL15-2K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8349724..8361928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4V64_RS37630 (Q4V64_37625) - 8352703..8354559 (-) 1857 WP_124439100.1 HSP90 family protein -
  Q4V64_RS37635 (Q4V64_37630) recG 8354724..8356928 (+) 2205 WP_124438958.1 ATP-dependent DNA helicase RecG Machinery gene
  Q4V64_RS37640 (Q4V64_37635) rsmD 8357031..8357612 (+) 582 WP_124438957.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Q4V64_RS37645 (Q4V64_37640) coaD 8357642..8358121 (+) 480 WP_216377578.1 pantetheine-phosphate adenylyltransferase -
  Q4V64_RS37650 (Q4V64_37645) - 8358232..8359332 (+) 1101 WP_124438956.1 ATP synthase F0 subunit B -
  Q4V64_RS37655 (Q4V64_37650) - 8359495..8360139 (+) 645 WP_124438955.1 YceD family protein -
  Q4V64_RS37660 (Q4V64_37655) rpmF 8360142..8360315 (+) 174 WP_003951102.1 50S ribosomal protein L32 -
  Q4V64_RS37665 (Q4V64_37660) rnc 8360335..8361147 (+) 813 WP_172629104.1 ribonuclease III -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 79936.68 Da        Isoelectric Point: 6.2179

>NTDB_id=786306 Q4V64_RS37635 WP_124438958.1 8354724..8356928(+) (recG) [Streptomyces sp. NL15-2K]
MDLVPALEEPLKKVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPLDEHVTVVAQVADARLHTFASAKA
PRGKGQRLEVTITDGSGRLQLVFFGHGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGDSEEAVDTWAGALI
PIYPATAKLESWKIGKAIQTVLPSAQEAVDPLPDSLREGRALVSLPEALLKIHRPHTKADVAGARDRLKWDEAFVLQIAL
ARRRHADAQLPAVPRKPKPDGLLTAFDDRLPFTLTEGQQRVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLATVD
AGGQAAMLAPTEVLAQQHHRSIVEMMGELAEGGMLGGAEQATKVVLLTGSMGVAARRQALLDLVTGEAGIVIGTHALIED
KVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAAD
KPHFLARAWERVREEVENGHQAYIVCPRIGDEDEDPKAAKKKPPEDEAEKRPPLAVLDVADQLAKGPLQSLKVEVLHGRM
QPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATVMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVTEMPEASPAR
QRLNSVAATLDGFELSRIDLEQRREGDVLGQAQSGTRSSLRMLAVIDDEEIIAEAREEAVRIVAADPDLEHLPALRTALD
ALLDEEREQYLEKG

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=786306 Q4V64_RS37635 WP_124438958.1 8354724..8356928(+) (recG) [Streptomyces sp. NL15-2K]
ATGGATCTCGTGCCCGCACTGGAAGAACCACTGAAAAAGGTGCTCGGCCCCGCCACCGCGAAGGTGATGGCCGAGCATCT
CGGCCTGCACACCGTCGGCGACCTCCTGCACCACTACCCGCGCAGATACGAGGAGCGCGGACAGCTCACCCACCTCGCCG
ACCTCCCCCTGGACGAGCACGTCACGGTGGTCGCCCAGGTCGCCGACGCCCGCCTGCACACCTTCGCCTCGGCCAAGGCG
CCCCGCGGCAAGGGCCAGCGCCTGGAAGTCACGATCACGGACGGCAGCGGCCGCCTCCAACTCGTCTTCTTCGGCCACGG
CGTTCACAAGCCCCACAAGGAGCTCCTGCCGGGCACGCGCGCGATGTTCGCGGGCAAGGTCTCCGTCTTCAACCGCCGTC
TGCAACTGGCGCATCCGGCATACGAGTTGCTGCGCGGCGATTCCGAGGAAGCCGTCGACACCTGGGCCGGCGCGCTCATC
CCGATCTACCCCGCGACCGCCAAGCTGGAGTCCTGGAAGATCGGCAAGGCGATCCAGACGGTGCTGCCCAGCGCCCAGGA
AGCCGTCGACCCGCTCCCGGACTCGCTCCGCGAGGGCCGCGCCCTGGTCTCCCTCCCCGAGGCCCTGCTGAAGATCCACC
GCCCGCACACCAAGGCTGACGTCGCCGGCGCCCGCGACCGCCTCAAGTGGGACGAGGCCTTCGTCCTCCAGATCGCCCTC
GCCCGCCGCCGCCACGCCGACGCCCAACTCCCGGCGGTCCCCCGCAAACCCAAGCCGGACGGCCTCCTCACGGCCTTCGA
CGACCGCCTCCCGTTCACCCTCACCGAGGGCCAGCAGCGGGTCTCCAAGGAGATCTTCGACGACCTGGCGACGGAGCATC
CGATGCACCGGTTGCTGCAGGGAGAGGTCGGTAGTGGAAAGACAATGGTGGCCCTCCGCGCCATGCTCGCCACGGTCGAC
GCCGGCGGCCAGGCCGCCATGCTCGCGCCCACTGAGGTGCTCGCCCAGCAGCATCACCGGTCGATCGTCGAGATGATGGG
CGAGCTGGCCGAGGGCGGGATGCTGGGCGGGGCCGAGCAGGCCACCAAGGTGGTGCTGCTCACCGGGTCGATGGGGGTGG
CCGCCCGGCGGCAGGCGCTGCTCGACCTGGTGACCGGAGAGGCCGGGATCGTGATCGGCACGCATGCCCTGATCGAGGAC
AAGGTGCAGTTCCACGACCTCGGGCTGGTCGTCGTCGACGAACAGCACCGCTTCGGCGTCGAGCAGCGCGACGCCCTGCG
CGGCAAGGGCAAACAGCCGCCGCACCTGCTGGTCATGACCGCCACACCGATCCCGCGCACGGTCGCCATGACCGTCTTCG
GCGACCTGGAGACCTCCGTCCTCGACCAGCTCCCGGCCGGCCGTTCGCCGATCGCCAGCCATGTCGTCCCGGCCGCCGAC
AAGCCCCACTTCCTGGCCAGGGCCTGGGAACGCGTACGCGAGGAGGTCGAGAACGGCCATCAGGCGTACATCGTCTGCCC
GCGCATCGGCGACGAGGACGAGGACCCCAAGGCCGCCAAGAAGAAGCCCCCCGAGGACGAGGCCGAGAAGCGCCCGCCGC
TCGCCGTCCTCGACGTGGCCGACCAGCTCGCCAAGGGGCCCCTGCAGAGCCTCAAGGTCGAGGTCCTGCACGGCCGTATG
CAGCCCGACGACAAGGACGCGGTCATGCGCCGCTTCGCCGCCGGCGAGACCGACGTCCTGGTCGCCACGACGGTCATCGA
GGTCGGCGTCAACGTGCCCAATGCCACGGTGATGGTGATCATGGACGCCGACCGCTTCGGCGTCTCCCAGCTGCACCAGC
TGCGCGGCCGGGTGGGCCGTGGCTCGGCGGCCGGCCTGTGCCTGCTGGTCACGGAGATGCCCGAGGCGAGCCCGGCCCGC
CAGCGGCTGAACTCCGTGGCCGCCACCCTCGACGGCTTCGAGCTCTCCCGCATCGACCTCGAACAGCGCCGCGAGGGCGA
TGTCCTCGGCCAGGCCCAGTCCGGCACCCGCTCCTCCCTGCGGATGCTCGCCGTCATCGACGACGAGGAGATCATCGCCG
AGGCCCGCGAGGAGGCCGTCCGGATCGTGGCCGCCGACCCGGACCTGGAACACCTGCCCGCCCTGCGCACCGCGCTGGAC
GCGTTGCTGGACGAGGAGAGGGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(296-448)

Helicase conserved C-terminal domain (Helicase_C)

(546-621)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(649-710)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.307

94.959

0.364