Detailed information NTG0786306

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSP57_RS26780
• Genome accession: NZ_CP117527
• Coordinates: 5689334..5690206 (+)
• Length: 290 a.a.
• NCBI ID: WP_003125204.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain MF1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5684334..5695206

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSP57_RS26765 (PSP57_26765)	pilA	5685722..5686174 (-)	453	WP_031636800.1	pilin	Machinery gene
PSP57_RS26770 (PSP57_26770)	pilB	5686406..5688106 (+)	1701	WP_023094327.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSP57_RS26775 (PSP57_26775)	pilC	5688110..5689330 (+)	1221	WP_009315898.1	type 4a pilus biogenesis protein PilC	Machinery gene
PSP57_RS26780 (PSP57_26780)	pilD	5689334..5690206 (+)	873	WP_003125204.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PSP57_RS26785 (PSP57_26785)	coaE	5690203..5690814 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
PSP57_RS26790 (PSP57_26790)	yacG	5690811..5691011 (+)	201	WP_017148551.1	DNA gyrase inhibitor YacG	-
PSP57_RS26795 (PSP57_26795)	-	5691048..5691257 (-)	210	WP_003094660.1	hypothetical protein	-
PSP57_RS26800 (PSP57_26800)	-	5691363..5692052 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PSP57_RS26805 (PSP57_26805)	-	5692049..5692519 (-)	471	WP_023096122.1	hypothetical protein	-
PSP57_RS26810 (PSP57_26810)	-	5692516..5692941 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PSP57_RS26815 (PSP57_26815)	-	5693074..5693703 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PSP57_RS26820 (PSP57_26820)	-	5693700..5694149 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
PSP57_RS26825 (PSP57_26825)	-	5694175..5694345 (+)	171	WP_023096123.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31839.89 Da
• Isoelectric Point: 7.7068

>NTDB_id=786306 PSP57_RS26780 WP_003125204.1 5689334..5690206(+) (pilD) [Pseudomonas aeruginosa strain MF1]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=786306 PSP57_RS26780 WP_003125204.1 5689334..5690206(+) (pilD) [Pseudomonas aeruginosa strain MF1]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472