Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q4V64_RS15880 Genome accession   NZ_CP130630
Coordinates   3598141..3600069 (+) Length   642 a.a.
NCBI ID   WP_124442486.1    Uniprot ID   -
Organism   Streptomyces sp. NL15-2K     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3593141..3605069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4V64_RS15845 (Q4V64_15840) - 3593346..3593516 (+) 171 WP_172629382.1 hypothetical protein -
  Q4V64_RS15865 (Q4V64_15860) - 3594267..3594572 (+) 306 WP_124442489.1 YtxH domain-containing protein -
  Q4V64_RS15870 (Q4V64_15865) - 3594746..3596200 (+) 1455 WP_124442488.1 FGGY family carbohydrate kinase -
  Q4V64_RS15875 (Q4V64_15870) rcrP 3596408..3598141 (+) 1734 WP_124442487.1 ABC transporter ATP-binding protein Regulator
  Q4V64_RS15880 (Q4V64_15875) rcrQ 3598141..3600069 (+) 1929 WP_124442486.1 ABC transporter ATP-binding protein Regulator
  Q4V64_RS15885 (Q4V64_15880) - 3600186..3601484 (-) 1299 WP_124442485.1 RNA polymerase sigma factor -
  Q4V64_RS15890 (Q4V64_15885) dnaG 3601589..3603490 (-) 1902 WP_124442484.1 DNA primase -
  Q4V64_RS15895 (Q4V64_15890) - 3603529..3604803 (-) 1275 WP_124442483.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69583.24 Da        Isoelectric Point: 5.9133

>NTDB_id=786255 Q4V64_RS15880 WP_124442486.1 3598141..3600069(+) (rcrQ) [Streptomyces sp. NL15-2K]
MAGPAGRMMAGGGPDQHSMDFKGSGKRLVAQFKPERLTIYALLLCVLVSVGLSVIGPKILGKATDLVFAGIIGRQMPAGD
TKDEVLASMRERGDGSIADMLRSTDFTPGKGIDFGAVGNVLLLALVVFMVAGLLMLVATRLVNSAVNRTMYRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLVMMFWVSWLLALVALVTVPLSYVVATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHALVKVFGRQDESAQKFAEQNEALYEAGFKAQFNSGVMQPLMMFVSNLNYVLIA
VVGGLRVAAGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQEADPVPGVRPEELRGRVALE
HVSFRYDPEKPLIEDLSLKVEPGQTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREINRGEIEEAARAAHADRFIRTLPDGYDTVIDGEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGTHTDLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=786255 Q4V64_RS15880 WP_124442486.1 3598141..3600069(+) (rcrQ) [Streptomyces sp. NL15-2K]
ATGGCGGGGCCAGCAGGGCGGATGATGGCCGGGGGCGGCCCCGACCAGCATTCGATGGACTTCAAGGGGTCGGGCAAACG
GCTCGTCGCCCAGTTCAAGCCGGAGCGGCTGACCATCTACGCGCTGCTGCTGTGCGTGCTCGTGTCCGTCGGCCTGTCGG
TCATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGGATCATCGGGCGGCAGATGCCGGCCGGGGAC
ACCAAGGACGAGGTCCTCGCGTCGATGCGCGAGCGCGGCGACGGCTCGATCGCCGACATGCTCAGGAGCACGGACTTCAC
CCCGGGCAAGGGCATCGACTTCGGCGCCGTCGGGAACGTCCTGCTGCTCGCGCTCGTCGTGTTCATGGTCGCCGGTCTGC
TGATGCTGGTGGCCACGCGGCTGGTGAACAGCGCCGTGAACCGGACCATGTACCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGGGCCACCAACGACATCGACAA
CATCGGGCAGACCCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGGTGCTCACCATCATCGGCGTGCTCGTGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTGGTCGCCCTGGTCACCGTGCCGCTGTCGTACGTCGTCGCCACGCGCGTCGGCAAA
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CGCCCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCCCAGAAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGATCGCG
GTCGTCGGCGGGCTGCGGGTGGCGGCCGGCGCGCTGTCCATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTCGTCCAGTCGGGTGTCGCCTCGGCCGAGCGGGTCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGATCCGGTGCCGGGCGTACGGCCCGAGGAACTGCGCGGGCGGGTGGCGCTGGAG
CACGTGTCGTTCCGGTACGACCCCGAGAAGCCGCTCATCGAGGACCTCTCGCTGAAGGTCGAGCCCGGGCAGACGGTCGC
CATCGTCGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGACGTCACCGGCGGGCGTA
TCACCCTCGACGGCGTCGACATCGCCAGGATGTCCCGGGACGAACTGCGGGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACGATCGCCGAGAACATCGCGTACGGGGCGTCCAGGGAGATCAACCGGGGTGAGATCGAGGAGGC
GGCTCGGGCGGCCCACGCGGACCGGTTCATCCGGACGCTGCCCGACGGCTACGACACCGTGATCGACGGTGAGGGCAGTG
GGGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTTTTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCGGTGGACACGCGGACGGAAGTGTTGATCCAGAAGGCGATGGCCAAGCTGGCGCATGGGCGTACGTCGTT
CGTGATCGCGCATCGGTTGTCGACGATTCGGGACGCGGACACGATTCTGGTGATGGAGAACGGGGCGATCGTCGAGCAGG
GTACGCATACCGATCTGCTGGCGGCCGATGGGGCGTATGCGCGGTTGTACAAGGCGCAGTTCGCTCAGGCGGTGGCTGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.129

96.262

0.386